CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31096	Soybean	plastid	98.71	98.71
VIT_13s0019g03350.t01	Wine grape	extracellular, plastid	87.08	85.75
Solyc05g052600.2.1	Tomato	plastid	85.79	84.26
PGSC0003DMT400069750	Potato	cytosol, extracellular, plastid	85.79	84.05
AT3G55800.1	Thale cress	plastid	81.4	80.15
CDX76072	Canola	plastid	81.14	79.7
Bra014720.1-P	Field mustard	plastid	80.62	79.19
CDY02960	Canola	plastid	80.62	79.19
Bra007192.1-P	Field mustard	plastid	80.36	79.13
CDX72200	Canola	plastid	80.36	78.93
GSMUA_Achr1P17270_001	Banana	plastid	80.36	78.93
CDY27264	Canola	plastid	80.1	78.88
CDX67626	Canola	plastid	79.33	77.92
Os04t0234600-01	Rice	plastid	78.29	77.3
EES01767	Sorghum	plastid	75.71	76.5
TraesCS3B01G398300.1	Wheat	plastid	77.0	75.83
TraesCS3A01G367000.1	Wheat	plastid	76.74	75.57
TraesCS3D01G359900.2	Wheat	plastid, unclear	76.74	75.57
CDY63439	Canola	cytosol	54.78	75.18
Bra003221.1-P	Field mustard	plastid	60.98	74.68
Zm00001d042840_P001	Maize	plastid	72.87	74.41
HORVU3Hr1G085270.8	Barley	plastid	72.87	70.5
KRH31099	Soybean	peroxisome	29.72	63.54
KRH43947	Soybean	cytosol	24.03	27.19
KRH08703	Soybean	cytosol, nucleus	23.77	26.9
KRH35151	Soybean	cytosol	23.26	26.63
KRG91644	Soybean	cytosol	23.0	26.25
KRH00107	Soybean	nucleus, plastid	25.32	23.9
KRH49250	Soybean	nucleus, plastid	25.06	23.77
KRH10483	Soybean	cytosol	13.95	22.5
KRH49837	Soybean	plastid	21.45	20.75
KRH42081	Soybean	plastid	21.45	20.75

Protein Annotations

KEGG:00010+3.1.3.11	KEGG:00030+3.1.3.11	KEGG:00051+3.1.3.11	KEGG:00680+3.1.3.11	KEGG:00710+3.1.3.11	MapMan:1.2.8
EntrezGene:100786122	Gene3D:3.30.540.10	Gene3D:3.40.190.80	EMBL:ACUP02010817	InterPro:FBPase_N	InterPro:FBPase_class-1
InterPro:Fructose_bisphosphatase_AS	EnsemblPlantsGene:GLYMA_18G030400	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005986	GO:GO:0006000	GO:GO:0006002
GO:GO:0006094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016311
GO:GO:0016787	GO:GO:0016791	GO:GO:0030388	GO:GO:0042132	GO:GO:0042578	UniProt:I1MZ53
EnsemblPlants:KRG97781	ProteinID:KRG97781	ProteinID:KRG97781.1	HAMAP:MF_01855	PFAM:PF00316	PIRSF:PIRSF000904
PRINTS:PR01958	ScanProsite:PS00124	PANTHER:PTHR11556	PANTHER:PTHR11556:SF2	MetaCyc:PWY-5484	InterPro:SBPase
SUPFAM:SSF56655	UniParc:UPI0001CAA7CF	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:2336662..2340032

Molecular Weight (calculated)

41734.8 Da

IEP (calculated)

6.375

GRAVY (calculated)

-0.112

Length

387 amino acids

Sequence
(BLAST)

001: METGIACYTR GPFLPSVSSK HSPPSISPSF GLRSLKSSSL FGESLRVASK STLKVSKTKN TSLVTRCEIG DSLEEFLTKA TPDKGLIRLL VSMGEALRTI
101: SFKVKTASCG GTQCVNTFGD EQLAVDLLAN QLLFEALNYS HFCKYACSEE NPELLDMGGP VEGGFSVAFD PLDGSSIVDT NFTVGTIFGV WPGDKLTGIT
201: GRDQVAAAMG VLGPRTTYVL ALKDFPGTHE FLLLDEGKWQ HVKETTEIGE GKLFSPGNLR ATSDNPDYAK LIDYYVNEKY TLRYTGGMVP DVNQIIVKEK
301: GIFTNVSSPS AKAKLRLLFE VAPLGFLIEK AGGYSSDGHQ SVLDKVISNI DDRTQVAYGS KNEIIRFEET LYGKSRLKGG VAVGAAA

Best Arabidopsis Sequence Match ( AT3G55800.1 )
(BLAST)

001: METSIACYSR GILPPSVSSQ RSSTLVSPPS YSTSSSFKRL KSSSIFGDSL RLAPKSQLKA TKAKSNGAST VTKCEIGQSL EEFLAQATPD KGLRTLLMCM
101: GEALRTIAFK VRTASCGGTA CVNSFGDEQL AVDMLADKLL FEALQYSHVC KYACSEEVPE LQDMGGPVEG GFSVAFDPLD GSSIVDTNFT VGTIFGVWPG
201: DKLTGITGGD QVAAAMGIYG PRTTYVLAVK GFPGTHEFLL LDEGKWQHVK ETTEIAEGKM FSPGNLRATF DNSEYSKLID YYVKEKYTLR YTGGMVPDVN
301: QIIVKEKGIF TNVTSPTAKA KLRLLFEVAP LGLLIENAGG FSSDGHKSVL DKTIINLDDR TQVAYGSKNE IIRFEETLYG TSRLKNVPIG VTA

Arabidopsis Description

SBPASESedoheptulose-1,7-bisphosphatase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P46283]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.