CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49250	Soybean	nucleus, plastid	97.8	98.28
VIT_08s0007g01570.t01	Wine grape	plastid	86.83	86.41
Solyc09g011810.2.1	Tomato	plastid	82.68	84.12
PGSC0003DMT400052463	Potato	cytosol	82.93	83.33
Os03t0267300-01	Rice	plastid	79.02	79.8
Bra007041.1-P	Field mustard	plastid	80.49	79.71
Bra014841.1-P	Field mustard	plastid	79.76	79.37
KXG39716	Sorghum	plastid	78.05	78.24
AT3G54050.1	Thale cress	plastid	79.51	78.18
TraesCS4D01G212000.1	Wheat	plastid	76.1	76.28
Zm00001d028562_P001	Maize	plastid	76.83	76.27
TraesCS4A01G093100.1	Wheat	plastid	75.61	75.79
TraesCS4B01G211400.1	Wheat	plastid	75.37	75.55
HORVU4Hr1G060630.1	Barley	plastid	75.37	75.55
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	81.22	67.0
CDY07558	Canola	mitochondrion, vacuole	32.68	66.01
KRH35151	Soybean	cytosol	43.41	52.66
KRG91644	Soybean	cytosol	42.44	51.33
KRH08703	Soybean	cytosol, nucleus	42.44	50.88
KRH43947	Soybean	cytosol	42.2	50.58
KRH10483	Soybean	cytosol	22.93	39.17
KRH42081	Soybean	plastid	37.8	38.75
KRH49837	Soybean	plastid	37.07	38.0
KRH31096	Soybean	plastid	23.9	25.32
KRG97781	Soybean	nucleus, plastid	23.9	25.32
KRH31099	Soybean	peroxisome	9.76	22.1

Protein Annotations

KEGG:00010+3.1.3.11	KEGG:00030+3.1.3.11	KEGG:00051+3.1.3.11	KEGG:00680+3.1.3.11	KEGG:00710+3.1.3.11	MapMan:1.2.6
EntrezGene:100799873	Gene3D:3.30.540.10	Gene3D:3.40.190.80	EMBL:ACUP02011383	InterPro:FBPase_N	InterPro:FBPase_class-1
InterPro:FBPtase	InterPro:Fructose_bisphosphatase_AS	EnsemblPlantsGene:GLYMA_18G193600	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005975	GO:GO:0005986
GO:GO:0006000	GO:GO:0006002	GO:GO:0006094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016311	GO:GO:0016787	GO:GO:0016791	GO:GO:0030388	GO:GO:0042132
GO:GO:0042578	UniProt:I1N2R6	EnsemblPlants:KRH00107	ProteinID:KRH00107	ProteinID:KRH00107.1	HAMAP:MF_01855
PFAM:PF00316	PIRSF:PIRSF000904	PIRSF:PIRSF500210	PRINTS:PR00115	ScanProsite:PS00124	PANTHER:PTHR11556
PANTHER:PTHR11556:SF28	MetaCyc:PWY-5484	SUPFAM:SSF56655	UniParc:UPI0001CA923F	SEG:seg	:

Description

hypothetical protein

Coordinates

chr18:+:46669124..46671854

Molecular Weight (calculated)

44650.1 Da

IEP (calculated)

5.031

GRAVY (calculated)

-0.152

Length

410 amino acids

Sequence
(BLAST)

001: MVAMAAATAS SQLIFSKPRS PSRLCPFQLC VFDTKQVLSS SSGRRRHVGG SGVRCMAVGE AATTETKKRS GYELQTLTNW LLKQEQAGVI DAELTIVLSS
101: ISMACKQIAS LVQRANISNL TGVQGAVNVQ GEDQKKLDVV SNEVFSNCLR SSGRTGIIAS EEEDVPVAVE ESYSGNYIVV FDPLDGSSNI DAAVSTGSIF
201: GIYSPNDECL ADIGDDPTLD TTEQRCVVNV CQPGSNLLAA GYCMYSSSII FVLTLGNGVF VFTLDPMYGE FVLTQENLQI PRAGKIYAFN EGNYQLWDDK
301: LKKYIDDLKD PGPSGKPYSA RYIGSLVGDF HRTLLYGGIY GYPRDKKSKN GKLRLLYECA PMSFIVEQAG GKGSDGHQRI LDIQPTEIHQ RVPLYIGSVE
401: EVEKVEKYLA

Best Arabidopsis Sequence Match ( AT3G54050.1 )
(BLAST)

001: MAATAATTTS SHLLLSSSRH VASSSQPSIL SPRSLFSNNG KRAPTGVRNH QYASGVRCMA VAADAAETKT AARKKSGYEL QTLTGWLLRQ EMKGEIDAEL
101: TIVMSSISLA CKQIASLVQR AGISNLTGVQ GAVNIQGEDQ KKLDVISNEV FSNCLRSSGR TGIIASEEED VPVAVEESYS GNYVVVFDPL DGSSNIDAAV
201: STGSIFGIYS PNDECIVDDS DDISALGSEE QRCIVNVCQP GNNLLAAGYC MYSSSVIFVL TLGKGVFSFT LDPMYGEFVL TQENIEIPKA GRIYSFNEGN
301: YQMWDDKLKK YIDDLKDPGP TGKPYSARYI GSLVGDFHRT LLYGGIYGYP RDAKSKNGKL RLLYECAPMS FIVEQAGGKG SDGHSRVLDI QPTEIHQRVP
401: LYIGSTEEVE KLEKYLA

Arabidopsis Description

CFBP1Fructose-1,6-bisphosphatase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25851]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.