CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00107	Soybean	nucleus, plastid	98.28	97.8
VIT_08s0007g01570.t01	Wine grape	plastid	86.03	85.19
Solyc09g011810.2.1	Tomato	plastid	82.84	83.87
PGSC0003DMT400052463	Potato	cytosol	83.33	83.33
Bra014841.1-P	Field mustard	plastid	80.39	79.61
Os03t0267300-01	Rice	plastid	79.17	79.56
Bra007041.1-P	Field mustard	plastid	80.64	79.47
KXG39716	Sorghum	plastid	78.43	78.24
AT3G54050.1	Thale cress	plastid	79.17	77.46
Zm00001d028562_P001	Maize	plastid	77.45	76.51
TraesCS4D01G212000.1	Wheat	plastid	76.23	76.04
TraesCS4B01G211400.1	Wheat	plastid	75.98	75.79
TraesCS4A01G093100.1	Wheat	plastid	75.74	75.55
HORVU4Hr1G060630.1	Barley	plastid	75.49	75.31
CDY07558	Canola	mitochondrion, vacuole	33.09	66.5
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	80.15	65.79
KRH35151	Soybean	cytosol	43.63	52.66
KRG91644	Soybean	cytosol	42.89	51.62
KRH43947	Soybean	cytosol	42.65	50.88
KRH08703	Soybean	cytosol, nucleus	42.65	50.88
KRH10483	Soybean	cytosol	23.04	39.17
KRH42081	Soybean	plastid	38.24	39.0
KRH49837	Soybean	plastid	37.5	38.25
KRH31096	Soybean	plastid	23.77	25.06
KRG97781	Soybean	nucleus, plastid	23.77	25.06
KRH31099	Soybean	peroxisome	9.8	22.1

Protein Annotations

KEGG:00010+3.1.3.11	KEGG:00030+3.1.3.11	KEGG:00051+3.1.3.11	KEGG:00680+3.1.3.11	KEGG:00710+3.1.3.11	MapMan:1.2.6
Gene3D:3.30.540.10	Gene3D:3.40.190.80	EntrezGene:547809	UniProt:A0A0R4J3Q0	EMBL:ACUP02004344	InterPro:FBPase_N
InterPro:FBPase_class-1	InterPro:FBPtase	InterPro:Fructose_bisphosphatase_AS	EnsemblPlantsGene:GLYMA_07G142700	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005975	GO:GO:0005986	GO:GO:0006000	GO:GO:0006002	GO:GO:0006094	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015979
GO:GO:0016311	GO:GO:0016787	GO:GO:0016791	GO:GO:0019253	GO:GO:0030388	GO:GO:0042132
GO:GO:0042578	GO:GO:0046872	EnsemblPlants:KRH49250	ProteinID:KRH49250	ProteinID:KRH49250.1	HAMAP:MF_01855
PFAM:PF00316	PIRSF:PIRSF000904	PIRSF:PIRSF500210	PRINTS:PR00115	ScanProsite:PS00124	PANTHER:PTHR11556
PANTHER:PTHR11556:SF28	MetaCyc:PWY-5484	SUPFAM:SSF56655	UniParc:UPI0001B6429E	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:+:16982351..16985199

Molecular Weight (calculated)

44423.9 Da

IEP (calculated)

4.929

GRAVY (calculated)

-0.125

Length

408 amino acids

Sequence
(BLAST)

001: MVAMAAATAS TQLIFSKPCS PSRLCPFQLC VFDTKQVLSS GRRRHVGGSG VRCMAVGEAA TTGTKKRSGY ELQTLTSWLL KQEQAGVIDA ELTIVLSSIS
101: MACKQIASLV QRANISNLTG VQGAVNVQGE DQKKLDVVSN EVFSNCLRSS GRTGIIASEE EDVPVAVEES YSGNYIVVFD PLDGSSNIDA AVSTGSIFGI
201: YSPNDECLAD IDDDPTLDTT EQRCIVNVCQ PGSNLLAAGY CMYSSSIIFV LTLGNGVFVF TLDPMYGEFV LTQENLQIPR AGKIYAFNEG NYQLWDEKLK
301: KYIDDLKDPG PSGKPYSARY IGSLVGDFHR TLLYGGIYGY PRDKKSKNGK LRLLYECAPM SFIVEQAGGK GSDGHQRILD IQPTEIHQRV PLYIGSVEEV
401: EKVEKYLA

Best Arabidopsis Sequence Match ( AT3G54050.1 )
(BLAST)

001: MAATAATTTS SHLLLSSSRH VASSSQPSIL SPRSLFSNNG KRAPTGVRNH QYASGVRCMA VAADAAETKT AARKKSGYEL QTLTGWLLRQ EMKGEIDAEL
101: TIVMSSISLA CKQIASLVQR AGISNLTGVQ GAVNIQGEDQ KKLDVISNEV FSNCLRSSGR TGIIASEEED VPVAVEESYS GNYVVVFDPL DGSSNIDAAV
201: STGSIFGIYS PNDECIVDDS DDISALGSEE QRCIVNVCQP GNNLLAAGYC MYSSSVIFVL TLGKGVFSFT LDPMYGEFVL TQENIEIPKA GRIYSFNEGN
301: YQMWDDKLKK YIDDLKDPGP TGKPYSARYI GSLVGDFHRT LLYGGIYGYP RDAKSKNGKL RLLYECAPMS FIVEQAGGKG SDGHSRVLDI QPTEIHQRVP
401: LYIGSTEEVE KLEKYLA

Arabidopsis Description

CFBP1Fructose-1,6-bisphosphatase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25851]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.