Factsheet for TraesCS4D01G283800.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G325600.1
TraesCS1B01G338800.1
TraesCS1B01G339000.1
TraesCS1D01G327500.1
TraesCS4A01G019100.1
TraesCS4B01G285000.1
TraesCS4D01G283800.1
TraesCS7A01G562100.1
TraesCS7D01G001000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61410.1	TraesCS1A01G325600.1	AT5G42980.1	15352244
AT5G61410.1	TraesCS1B01G338800.1	AT5G42980.1	15352244
AT5G61410.1	TraesCS1B01G339000.1	AT5G42980.1	15352244
AT5G61410.1	TraesCS1D01G327500.1	AT5G42980.1	15352244
AT5G61410.1	TraesCS7A01G562100.1	AT5G42980.1	15352244
AT5G61410.1	TraesCS7D01G001000.1	AT5G42980.1	15352244
AT5G61410.1	TraesCS4A01G019100.1	AT5G61410.1	21798944
AT5G61410.1	TraesCS4B01G285000.1	AT5G61410.1	21798944
AT5G61410.1	TraesCS4D01G283800.1	AT5G61410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G019100.1	Wheat	plastid	99.27	99.27
TraesCS4B01G285000.1	Wheat	plastid	99.27	99.27
Os03t0169100-01	Rice	plastid	85.71	85.4
Zm00001d027841_P002	Maize	plastid	85.71	85.4
CDX98974	Canola	plastid	83.15	82.55
Bra009244.1-P	Field mustard	plastid	82.78	82.18
CDX70050	Canola	plastid	82.78	82.18
Bra029310.1-P	Field mustard	cytosol	23.08	81.82
AT5G61410.1	Thale cress	plastid	83.52	81.14
CDY02150	Canola	plastid	83.52	80.85
Bra012963.1-P	Field mustard	plastid	83.52	80.85
KRH56893	Soybean	plastid	82.78	80.71
KRH03501	Soybean	plastid	82.05	80.0
EER92786	Sorghum	extracellular, plastid	80.22	79.64
CDY64139	Canola	plastid	82.42	79.51
Solyc03g115820.2.1	Tomato	plastid	81.32	78.72
PGSC0003DMT400050256	Potato	plastid	80.22	76.84
GSMUA_Achr6P10790_001	Banana	plastid	78.75	76.24
GSMUA_Achr2P21940_001	Banana	plastid	77.29	74.56
Zm00001d048324_P001	Maize	plastid	81.69	71.7
VIT_17s0000g06450.t01	Wine grape	plastid	76.92	70.23
CDY71665	Canola	plastid	57.88	66.11
HORVU4Hr1G074810.3	Barley	cytosol, plastid	78.39	66.05
Bra012962.1-P	Field mustard	plastid	50.18	59.31
TraesCS5D01G292800.2	Wheat	cytosol	32.97	39.82

Protein Annotations

KEGG:00030+5.1.3.1	KEGG:00040+5.1.3.1	KEGG:00710+5.1.3.1	MapMan:1.2.10	Gene3D:3.20.20.70	InterPro:Aldolase_TIM
GO:GO:0003674	GO:GO:0003824	GO:GO:0004750	GO:GO:0005975	GO:GO:0006098	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016857	InterPro:IPR013785	PFAM:PF00834
PIRSF:PIRSF001461	ScanProsite:PS01085	ScanProsite:PS01086	PANTHER:PTHR11749	PANTHER:PTHR11749:SF4	InterPro:Ribul_P_3_epim
InterPro:Ribul_P_3_epim-like	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	TIGRFAMs:TIGR01163	EnsemblPlantsGene:TraesCS4D01G283800	EnsemblPlants:TraesCS4D01G283800.1
TIGR:cd00429	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:455487842..455491345

Molecular Weight (calculated)

28960.1 Da

IEP (calculated)

8.325

GRAVY (calculated)

0.177

Length

273 amino acids

Sequence
(BLAST)

001: MASPSSSLCS SLGYPRAASL GGRRRVGFSS SRKLFQVKAS RVDSFSKSDI IVSPSILSAN FAKLGEQVKA VEVAGCDWIH VDVMDGRFVP NITIGPLIVD
101: ALRPVTDLPL DVHLMIVEPE QRIPDFIKAG ADIVSVHCEQ TATIHLHRTV DQIKSLGAKA GVVLNPGTPL SAIEYVLESV DLVLIMSVNP GFGGQSFIES
201: QVKKIADLRK LCEEKGVNPW IEVDGGVSPK NAYKVIEAGA NALVAGSAVF GAKDYAEAIK GIKTSKRPVA VAA

Best Arabidopsis Sequence Match ( AT5G61410.2 )
(BLAST)

001: MSTSAASLCC SSTQVNGFGL RPERSLLYQP TSFSFSRRRT HGIVKASSRV DRFSKSDIIV SPSILSANFA KLGEQVKAVE LAGCDWIHVD VMDGRFVPNI
101: TIGPLVVDAL RPVTDLPLDV HLMIVEPEQR VPDFIKAGAD IVSVHCEQQS TIHLHRTVNQ IKSLGAKAGV VLNPGTPLSA IEYVLDMVDL VLIMSVNPGF
201: GGQSFIESQV KKISDLRKMC AEKGVNPWIE VDGGVTPANA YKVIEAGANA LVAGSAVFGA KDYAEAIKGI KASKRPAAVA V

Arabidopsis Description

RPERPE [Source:UniProtKB/TrEMBL;Acc:A0A178UPG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.