Factsheet for Bra009244.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009244.1-P
Bra012962.1-P
Bra012963.1-P
Bra027469.1-P
Bra029310.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61410.1	Bra027469.1-P	AT5G42980.1	15352244
AT5G61410.1	Bra009244.1-P	AT5G61410.1	21798944
AT5G61410.1	Bra012962.1-P	AT5G61410.1	21798944
AT5G61410.1	Bra012963.1-P	AT5G61410.1	21798944
AT5G61410.1	Bra029310.1-P	AT5G61410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70050	Canola	plastid	100.0	100.0
Bra029310.1-P	Field mustard	cytosol	24.73	88.31
AT5G61410.1	Thale cress	plastid	89.45	87.54
Bra012963.1-P	Field mustard	plastid	88.73	86.52
TraesCS4D01G283800.1	Wheat	golgi, plastid	82.18	82.78
TraesCS4B01G285000.1	Wheat	plastid	82.18	82.78
TraesCS4A01G019100.1	Wheat	plastid	82.18	82.78
KRH03501	Soybean	plastid	83.27	81.79
KRH56893	Soybean	plastid	82.91	81.43
Zm00001d027841_P002	Maize	plastid	80.73	81.02
Os03t0169100-01	Rice	plastid	80.36	80.66
Solyc03g115820.2.1	Tomato	plastid	82.55	80.5
GSMUA_Achr6P10790_001	Banana	plastid	81.45	79.43
PGSC0003DMT400050256	Potato	plastid	82.18	79.3
EER92786	Sorghum	extracellular, plastid	79.27	79.27
GSMUA_Achr2P21940_001	Banana	plastid	78.18	75.97
VIT_17s0000g06450.t01	Wine grape	plastid	80.36	73.91
Zm00001d048324_P001	Maize	plastid	77.09	68.17
Bra012962.1-P	Field mustard	plastid	53.09	63.2
HORVU4Hr1G074810.3	Barley	cytosol, plastid	62.91	53.4
Bra027631.1-P	Field mustard	cytosol	33.82	33.1

Protein Annotations

KEGG:00030+5.1.3.1	KEGG:00040+5.1.3.1	KEGG:00710+5.1.3.1	MapMan:1.2.10	Gene3D:3.20.20.70	InterPro:Aldolase_TIM
EnsemblPlantsGene:Bra009244	EnsemblPlants:Bra009244.1	EnsemblPlants:Bra009244.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004750
GO:GO:0005488	GO:GO:0005575	GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005975	GO:GO:0006098	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009409	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009605
GO:GO:0009607	GO:GO:0009624	GO:GO:0009628	GO:GO:0009941	GO:GO:0009987	GO:GO:0010319
GO:GO:0016853	GO:GO:0016857	GO:GO:0046872	GO:GO:0048046	InterPro:IPR013785	UniProt:M4CYE7
PFAM:PF00834	PIRSF:PIRSF001461	ScanProsite:PS01085	ScanProsite:PS01086	PANTHER:PTHR11749	PANTHER:PTHR11749:SF4
InterPro:Ribul_P_3_epim	InterPro:Ribul_P_3_epim-like	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	TIGRFAMs:TIGR01163	UniParc:UPI000254539B

Description

AT5G61410 (E=1e-137) RPE, EMB2728 | RPE; catalytic/ ribulose-phosphate 3-epimerase

Coordinates

chrA10:-:15788856..15790413

Molecular Weight (calculated)

29282.6 Da

IEP (calculated)

7.548

GRAVY (calculated)

0.189

Length

275 amino acids

Sequence
(BLAST)

001: MSSLAASLVT GVGLRPERPI LYQPTSFPSS RRNTHGVVKA SARVDKFSKS DIIVSPSILS ANFSKLGEQV KAVELAGCDW IHVDVMDGRF VPNITIGPLV
101: VDALRPVTDL PLDVHLMIVE PEQRVPDFIK AGADIVSVHC EQSSTIHLHR TVNQIKSLGA KAGVVLNPGT PLSAIECVLD SVDLVLIMSV NPGFGGQSFI
201: ESQVKKIADL RRMCVELGVN PWIEVDGGVT PKNAYKVIEA GANALVAGSA VFGAKDYAEA IKGIKTSKRP ETVAV

Best Arabidopsis Sequence Match ( AT5G61410.2 )
(BLAST)

001: MSTSAASLCC SSTQVNGFGL RPERSLLYQP TSFSFSRRRT HGIVKASSRV DRFSKSDIIV SPSILSANFA KLGEQVKAVE LAGCDWIHVD VMDGRFVPNI
101: TIGPLVVDAL RPVTDLPLDV HLMIVEPEQR VPDFIKAGAD IVSVHCEQQS TIHLHRTVNQ IKSLGAKAGV VLNPGTPLSA IEYVLDMVDL VLIMSVNPGF
201: GGQSFIESQV KKISDLRKMC AEKGVNPWIE VDGGVTPANA YKVIEAGANA LVAGSAVFGA KDYAEAIKGI KASKRPAAVA V

Arabidopsis Description

RPERPE [Source:UniProtKB/TrEMBL;Acc:A0A178UPG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.