Factsheet for Zm00001d027841_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

extracellular: 20408568
plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d027841_P002
Zm00001d038652_P003
Zm00001d048324_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61410.1	Zm00001d038652_P003	AT5G42980.1	15352244
AT5G61410.1	Zm00001d027841_P002	AT5G61410.1	21798944
AT5G61410.1	Zm00001d048324_P001	AT5G61410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0169100-01	Rice	plastid	91.24	91.24
EER92786	Sorghum	extracellular, plastid	86.86	86.55
TraesCS4D01G283800.1	Wheat	golgi, plastid	85.4	85.71
TraesCS4B01G285000.1	Wheat	plastid	85.4	85.71
Bra029310.1-P	Field mustard	cytosol	24.09	85.71
TraesCS4A01G019100.1	Wheat	plastid	85.4	85.71
Zm00001d048324_P001	Maize	plastid	93.43	82.32
KRH56893	Soybean	plastid	83.21	81.43
Bra009244.1-P	Field mustard	plastid	81.02	80.73
CDX70050	Canola	plastid	81.02	80.73
CDX98974	Canola	plastid	80.66	80.36
GSMUA_Achr6P10790_001	Banana	plastid	82.12	79.79
KRH03501	Soybean	plastid	81.39	79.64
Solyc03g115820.2.1	Tomato	plastid	81.75	79.43
AT5G61410.1	Thale cress	plastid	81.02	79.0
CDY02150	Canola	plastid	80.66	78.37
Bra012963.1-P	Field mustard	plastid	80.66	78.37
CDY64139	Canola	plastid	80.66	78.09
PGSC0003DMT400050256	Potato	plastid	81.02	77.89
GSMUA_Achr2P21940_001	Banana	plastid	78.83	76.33
VIT_17s0000g06450.t01	Wine grape	plastid	77.74	71.24
CDY71665	Canola	plastid	57.66	66.11
Bra012962.1-P	Field mustard	plastid	49.27	58.44
HORVU4Hr1G074810.3	Barley	cytosol, plastid	67.15	56.79
Zm00001d021050_P002	Maize	extracellular	32.85	36.44

Protein Annotations

KEGG:00030+5.1.3.1	KEGG:00040+5.1.3.1	KEGG:00710+5.1.3.1	MapMan:1.2.10	EntrezGene:100274365	Gene3D:3.20.20.70
InterPro:Aldolase_TIM	UniProt:B4FRQ1	EMBL:BT039789	EMBL:BT042862	GO:GO:0003674	GO:GO:0003824
GO:GO:0004750	GO:GO:0005488	GO:GO:0005975	GO:GO:0006098	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0016857	GO:GO:0046872	InterPro:IPR013785
ProteinID:ONL94083.1	PFAM:PF00834	PIRSF:PIRSF001461	ScanProsite:PS01085	ScanProsite:PS01086	PANTHER:PTHR11749
PANTHER:PTHR11749:SF4	InterPro:Ribul_P_3_epim	InterPro:Ribul_P_3_epim-like	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	TIGRFAMs:TIGR01163
UniParc:UPI00017B76BF	EnsemblPlantsGene:Zm00001d027841	EnsemblPlants:Zm00001d027841_P002	EnsemblPlants:Zm00001d027841_T002	SEG:seg	:

Description

Ribulose-phosphate 3-epimerase

Coordinates

chr1:+:14831730..14846621

Molecular Weight (calculated)

28935.1 Da

IEP (calculated)

8.003

GRAVY (calculated)

0.236

Length

274 amino acids

Sequence
(BLAST)

001: MATPSSSLCS SFASLRTASI GHPRGIASST PRKAFHVRAS ARVDKFSKSD IIVSPSILSA NFAKLGDQVK AVEVAGCDWI HVDVMDGRFV PNITIGPLVV
101: DALRPVTDLP LDVHLMIVEP EQRVPDFIKA GADIVSVHCE QTSTIHLHRT VNQIKSLGAK AGVVLNPATP LTAIDYVLDV VDLVLIMSVN PGFGGQSFIE
201: SQVKKIAELR RLCAEKGVNP WIEVDGGVGP KNAYKVIEAG ANAIVAGSAV FGAPDYAEAI KGIKTSQRPL AVAA

Best Arabidopsis Sequence Match ( AT5G61410.2 )
(BLAST)

001: MSTSAASLCC SSTQVNGFGL RPERSLLYQP TSFSFSRRRT HGIVKASSRV DRFSKSDIIV SPSILSANFA KLGEQVKAVE LAGCDWIHVD VMDGRFVPNI
101: TIGPLVVDAL RPVTDLPLDV HLMIVEPEQR VPDFIKAGAD IVSVHCEQQS TIHLHRTVNQ IKSLGAKAGV VLNPGTPLSA IEYVLDMVDL VLIMSVNPGF
201: GGQSFIESQV KKISDLRKMC AEKGVNPWIE VDGGVTPANA YKVIEAGANA LVAGSAVFGA KDYAEAIKGI KASKRPAAVA V

Arabidopsis Description

RPERPE [Source:UniProtKB/TrEMBL;Acc:A0A178UPG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.