CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70050
CDX98974
CDY02150
CDY32970
CDY43592
CDY64139
CDY71665

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61410.1	CDY32970	AT5G42980.1	15352244
AT5G61410.1	CDY43592	AT5G42980.1	15352244
AT5G61410.1	CDX70050	AT5G61410.1	21798944
AT5G61410.1	CDX98974	AT5G61410.1	21798944
AT5G61410.1	CDY02150	AT5G61410.1	21798944
AT5G61410.1	CDY64139	AT5G61410.1	21798944
AT5G61410.1	CDY71665	AT5G61410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70050	Canola	plastid	98.91	98.91
AT5G61410.1	Thale cress	plastid	89.82	87.9
CDY02150	Canola	plastid	88.73	86.52
CDY64139	Canola	plastid	88.73	86.22
TraesCS4D01G283800.1	Wheat	golgi, plastid	82.55	83.15
TraesCS4B01G285000.1	Wheat	plastid	82.55	83.15
TraesCS4A01G019100.1	Wheat	plastid	82.55	83.15
KRH03501	Soybean	plastid	83.27	81.79
KRH56893	Soybean	plastid	82.55	81.07
Os03t0169100-01	Rice	plastid	80.36	80.66
Zm00001d027841_P002	Maize	plastid	80.36	80.66
Solyc03g115820.2.1	Tomato	plastid	82.18	80.14
EER92786	Sorghum	extracellular, plastid	79.27	79.27
GSMUA_Achr6P10790_001	Banana	plastid	81.09	79.08
PGSC0003DMT400050256	Potato	plastid	81.82	78.95
GSMUA_Achr2P21940_001	Banana	plastid	78.55	76.33
VIT_17s0000g06450.t01	Wine grape	plastid	80.36	73.91
CDY71665	Canola	plastid	62.55	71.97
Zm00001d048324_P001	Maize	plastid	77.09	68.17
HORVU4Hr1G074810.3	Barley	cytosol, plastid	63.64	54.01
CDY49188	Canola	plastid	33.45	29.11
CDY47340	Canola	plastid	32.73	28.85

Protein Annotations

KEGG:00030+5.1.3.1	KEGG:00040+5.1.3.1	KEGG:00710+5.1.3.1	MapMan:1.2.10	Gene3D:3.20.20.70	GO:A0A078EDU3
InterPro:Aldolase_TIM	EnsemblPlants:CDX98974	ProteinID:CDX98974	ProteinID:CDX98974.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004750	GO:GO:0005975	GO:GO:0006098	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016857	EnsemblPlantsGene:GSBRNA2T00107090001	InterPro:IPR013785	PFAM:PF00834	PIRSF:PIRSF001461
ScanProsite:PS01085	ScanProsite:PS01086	PANTHER:PTHR11749	PANTHER:PTHR11749:SF4	MetaCyc:PWY-1861	MetaCyc:PWY-5723
InterPro:Ribul_P_3_epim	InterPro:Ribul_P_3_epim-like	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	TIGRFAMs:TIGR01163	UniParc:UPI0004EE6AF3

Description

BnaC09g48610D

Coordinates

chrLK031907:-:860887..863042

Molecular Weight (calculated)

29371.7 Da

IEP (calculated)

8.093

GRAVY (calculated)

0.174

Length

275 amino acids

Sequence
(BLAST)

001: MSSLAASLVT GVGLRPERPI LYQRTSFPSS RRNTHGVVKA SARVDKFSKS DIIVSPSILS ANFSKLGEQV KAVELAGCDW IHVDVMDGRF VPNITIGPLV
101: VDALRPVTDL PLDVHLMIVE PEQRVPDFIK AGADIVSVHC EQSSTIHLHR TVNQIKSLGA KAGVVLNPGT PLSAIEYVLD SVDLVLIMSV NPGFGGQSFI
201: ESQVKKIADL RRMCVELGVN PWIEVDGGVT PKNAYKVIEA GANALVAGSA VFGAKDYAEA IKGIKASKRP ETVAV

Best Arabidopsis Sequence Match ( AT5G61410.2 )
(BLAST)

001: MSTSAASLCC SSTQVNGFGL RPERSLLYQP TSFSFSRRRT HGIVKASSRV DRFSKSDIIV SPSILSANFA KLGEQVKAVE LAGCDWIHVD VMDGRFVPNI
101: TIGPLVVDAL RPVTDLPLDV HLMIVEPEQR VPDFIKAGAD IVSVHCEQQS TIHLHRTVNQ IKSLGAKAGV VLNPGTPLSA IEYVLDMVDL VLIMSVNPGF
201: GGQSFIESQV KKISDLRKMC AEKGVNPWIE VDGGVTPANA YKVIEAGANA LVAGSAVFGA KDYAEAIKGI KASKRPAAVA V

Arabidopsis Description

RPERPE [Source:UniProtKB/TrEMBL;Acc:A0A178UPG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.