CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03501
KRH56893

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61410.1	KRH03501	AT5G61410.1	21798944
AT5G61410.1	KRH56893	AT5G61410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03501	Soybean	plastid	95.0	95.0
Bra029310.1-P	Field mustard	cytosol	23.57	85.71
Solyc03g115820.2.1	Tomato	plastid	85.0	84.4
AT5G61410.1	Thale cress	plastid	84.64	84.34
Zm00001d027841_P002	Maize	plastid	81.43	83.21
PGSC0003DMT400050256	Potato	plastid	84.64	83.16
GSMUA_Achr6P10790_001	Banana	plastid	83.57	82.98
Bra009244.1-P	Field mustard	plastid	81.43	82.91
CDX70050	Canola	plastid	81.43	82.91
TraesCS4A01G019100.1	Wheat	plastid	80.71	82.78
TraesCS4B01G285000.1	Wheat	plastid	80.71	82.78
TraesCS4D01G283800.1	Wheat	golgi, plastid	80.71	82.78
CDX98974	Canola	plastid	81.07	82.55
Os03t0169100-01	Rice	plastid	80.71	82.48
CDY64139	Canola	plastid	83.21	82.33
CDY02150	Canola	plastid	82.86	82.27
Bra012963.1-P	Field mustard	plastid	82.86	82.27
EER92786	Sorghum	extracellular, plastid	78.21	79.64
GSMUA_Achr2P21940_001	Banana	plastid	79.29	78.45
VIT_17s0000g06450.t01	Wine grape	plastid	83.57	78.26
Zm00001d048324_P001	Maize	plastid	78.21	70.42
CDY71665	Canola	plastid	58.21	68.2
Bra012962.1-P	Field mustard	plastid	49.64	60.17
HORVU4Hr1G074810.3	Barley	cytosol, plastid	62.86	54.32
KRH06978	Soybean	nucleus	31.07	38.16
KRG94486	Soybean	nucleus	30.71	37.72

Protein Annotations

KEGG:00030+5.1.3.1	KEGG:00040+5.1.3.1	KEGG:00710+5.1.3.1	MapMan:1.2.10	EntrezGene:100786514	Gene3D:3.20.20.70
EMBL:ACUP02002800	InterPro:Aldolase_TIM	EnsemblPlantsGene:GLYMA_05G025300	GO:GO:0003674	GO:GO:0003824	GO:GO:0004750
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005975	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009052	GO:GO:0009056
GO:GO:0009987	GO:GO:0016857	GO:GO:0019323	GO:GO:0044262	GO:GO:0046872	UniProt:I1JZN0
InterPro:IPR013785	ProteinID:KRH56892.1	EnsemblPlants:KRH56893	ProteinID:KRH56893	ProteinID:KRH56893.1	ProteinID:KRH56894.1
ProteinID:KRH56895.1	PFAM:PF00834	ScanProsite:PS01085	ScanProsite:PS01086	PANTHER:PTHR11749	PANTHER:PTHR11749:SF4
MetaCyc:PWY-1861	MetaCyc:PWY-5723	InterPro:Ribul_P_3_epim-like	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	TIGRFAMs:TIGR01163
UniParc:UPI000233A568	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:2199576..2204613

Molecular Weight (calculated)

29810.1 Da

IEP (calculated)

8.229

GRAVY (calculated)

0.186

Length

280 amino acids

Sequence
(BLAST)

001: MAATSSLCSS TLQSQINGFC LHKTSLSHPR SLTFSRKKIS TTVKATSRVD KFSKSDIIVS PSILSANFAK LGEQVKAVEL AGCDWIHVDV MDGRFVPNIT
101: IGPLVVDALR PVTDLPLDVH LMIVEPEQRV PDFIKAGADI VSVHCEQSST IHLHRTVNQV KSLGAKAGVV LNPATPLSAI EYVLDVVDLV LIMSVNPGFG
201: GQSFIESQVK KISDLRRVCA EKGVNPWIEV DGGVGPANAY KVIEAGANAL VAGSAVFGAK DYAEAIRGIK TSKRPEAVAV

Best Arabidopsis Sequence Match ( AT5G61410.2 )
(BLAST)

001: MSTSAASLCC SSTQVNGFGL RPERSLLYQP TSFSFSRRRT HGIVKASSRV DRFSKSDIIV SPSILSANFA KLGEQVKAVE LAGCDWIHVD VMDGRFVPNI
101: TIGPLVVDAL RPVTDLPLDV HLMIVEPEQR VPDFIKAGAD IVSVHCEQQS TIHLHRTVNQ IKSLGAKAGV VLNPGTPLSA IEYVLDMVDL VLIMSVNPGF
201: GGQSFIESQV KKISDLRKMC AEKGVNPWIE VDGGVTPANA YKVIEAGANA LVAGSAVFGA KDYAEAIKGI KASKRPAAVA V

Arabidopsis Description

RPERPE [Source:UniProtKB/TrEMBL;Acc:A0A178UPG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.