CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 5
plastid 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plastid

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94486	Soybean	nucleus	93.42	93.42
VIT_14s0171g00130.t01	Wine grape	cytosol	85.96	88.29
Solyc05g007260.2.1	Tomato	cytosol, extracellular	79.39	83.8
PGSC0003DMT400059351	Potato	plastid	56.58	82.17
TraesCS5D01G292800.2	Wheat	cytosol	81.14	81.86
Os09t0505700-02	Rice	cytosol, plastid	81.58	81.58
TraesCS5A01G285400.1	Wheat	cytosol	80.7	81.42
EER99152	Sorghum	cytosol	80.26	81.33
AT3G01850.2	Thale cress	cytosol	79.39	80.44
TraesCS5B01G284600.1	Wheat	cytosol	80.26	79.57
AT1G63290.1	Thale cress	cytosol	78.95	79.3
Zm00001d021050_P002	Maize	extracellular	79.39	73.28
Bra027631.1-P	Field mustard	cytosol	81.58	66.19
HORVU5Hr1G076140.7	Barley	mitochondrion, plastid	79.39	63.29
CDY47340	Canola	plastid	81.58	59.62
GSMUA_Achr11P...	Banana	cytosol	82.89	58.88
CDY49188	Canola	plastid	81.14	58.54
KRH56893	Soybean	plastid	38.16	31.07
KRH03501	Soybean	plastid	38.16	31.07

Protein Annotations

KEGG:00030+5.1.3.1	KEGG:00040+5.1.3.1	KEGG:00710+5.1.3.1	EntrezGene:100527490	Gene3D:3.20.20.70	MapMan:3.9.2.2
EMBL:ACUP02009905	InterPro:Aldolase_TIM	EMBL:BT092335	UniProt:C6T4H4	EnsemblPlantsGene:GLYMA_16G059000	GO:GO:0003674
GO:GO:0003824	GO:GO:0004750	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005975	GO:GO:0006098	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009052	GO:GO:0009056	GO:GO:0009987	GO:GO:0016853	GO:GO:0016857
GO:GO:0019323	GO:GO:0044262	GO:GO:0046872	InterPro:IPR013785	EnsemblPlants:KRH06978	ProteinID:KRH06978
ProteinID:KRH06978.1	PFAM:PF00834	PIRSF:PIRSF001461	ScanProsite:PS01085	ScanProsite:PS01086	PANTHER:PTHR11749
PANTHER:PTHR11749:SF3	MetaCyc:PWY-1861	MetaCyc:PWY-5723	InterPro:Ribul_P_3_epim	InterPro:Ribul_P_3_epim-like	InterPro:RibuloseP-bd_barrel
SUPFAM:SSF51366	TIGRFAMs:TIGR01163	UniParc:UPI0001B159C7	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:5772754..5778684

Molecular Weight (calculated)

24547.8 Da

IEP (calculated)

5.876

GRAVY (calculated)

0.036

Length

228 amino acids

Sequence
(BLAST)

001: MGMTPKIAPS MLSSDFANLA SEAQRMLHFG ADWLHMDIMD GHFVPNLTIG APVIESLRKH TKAYLDCHLM VTNPLDYVEP LAKAGASGFT FHVETSKDNW
101: KELIQRIKSH GMIPGVALKP GTPVGEVYPL VEAENPVEMV LVMTVEPGFG GQKFMAETMD KVRILRKKYP SLDIEVDGGL GPSTIDVAAS AGANCIVAGS
201: SVFGAPEPAQ VISLLRSSVE KAQQTSIQ

Best Arabidopsis Sequence Match ( AT3G01850.1 )
(BLAST)

001: MVSPKIAPSM LSSDFANLAA EANRMIDLGA NWLHMDIMDG HFVPNLTIGA PVIESLRKHT NAYLDCHLMV TNPMDYVAQM AKAGASGFTF HVEVAQDNWQ
101: QLVEKIKSTG MRPGVALKPG TPVEQVYPLV EGTTPVEMVL VMTVEPGFGG QKFMPDMMDK VRALRQKYPT LDIQVDGGLG PSTIDTAAAA GANCIVAGSS
201: VFGAPEPGDV ISLLRTSVEK AQPTT

Arabidopsis Description

Ribulose-phosphate 3-epimerase [Source:UniProtKB/TrEMBL;Acc:Q94K13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.