Factsheet for PGSC0003DMT400059351

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 4
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g007260.2.1	Tomato	cytosol, extracellular	96.82	70.37
VIT_14s0171g00130.t01	Wine grape	cytosol	85.35	60.36
KRG94486	Soybean	nucleus	82.17	56.58
KRH06978	Soybean	nucleus	82.17	56.58
TraesCS5D01G292800.2	Wheat	cytosol	80.25	55.75
TraesCS5A01G285400.1	Wheat	cytosol	80.25	55.75
EER99152	Sorghum	cytosol	79.62	55.56
Os09t0505700-02	Rice	cytosol, plastid	78.98	54.39
TraesCS5B01G284600.1	Wheat	cytosol	79.62	54.35
AT1G63290.1	Thale cress	cytosol	76.43	52.86
AT3G01850.2	Thale cress	cytosol	75.16	52.44
Zm00001d021050_P002	Maize	extracellular	78.34	49.8
Bra027631.1-P	Field mustard	cytosol	79.62	44.48
HORVU5Hr1G076140.7	Barley	mitochondrion, plastid	77.71	42.66
CDY47340	Canola	plastid	78.98	39.74
CDY49188	Canola	plastid	78.34	38.92
GSMUA_Achr11P...	Banana	cytosol	77.07	37.69
PGSC0003DMT400050256	Potato	plastid	43.31	23.86

Protein Annotations

KEGG:00030+5.1.3.1	KEGG:00040+5.1.3.1	KEGG:00710+5.1.3.1	Gene3D:3.20.20.70	MapMan:3.9.2.2	InterPro:Aldolase_TIM
GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016857
InterPro:IPR013785	UniProt:M1C452	PFAM:PF00834	EnsemblPlantsGene:PGSC0003DMG400023059	PGSC:PGSC0003DMG400023059	EnsemblPlants:PGSC0003DMT400059351
ScanProsite:PS01086	PANTHER:PTHR11749	PANTHER:PTHR11749:SF3	InterPro:Ribul_P_3_epim-like	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366
UniParc:UPI000295D26A	:	:	:	:	:

Description

Ribulose-phosphate 3-epimerase, cytoplasmic isoform [Source:PGSC_GENE;Acc:PGSC0003DMG400023059]

Coordinates

chr5:+:5514146..5516468

Molecular Weight (calculated)

16737.2 Da

IEP (calculated)

4.797

GRAVY (calculated)

-0.158

Length

157 amino acids

Sequence
(BLAST)

001: MVTNPLDYVE PLGKAGASGF TFHVEASRDN WQELVQKIKS KGMKPGVSLK PGTPIEEVYP LLDGENSVEL VLVMTVEPGF GGQKFMPEMM DKVRTLRKKY
101: PSLDIEVDGG LGPSTIEAAT SAGANCIVAG SSVFGAPDPA QVITLLRGSV EEAQKRS

Best Arabidopsis Sequence Match ( AT3G01850.1 )
(BLAST)

001: MVSPKIAPSM LSSDFANLAA EANRMIDLGA NWLHMDIMDG HFVPNLTIGA PVIESLRKHT NAYLDCHLMV TNPMDYVAQM AKAGASGFTF HVEVAQDNWQ
101: QLVEKIKSTG MRPGVALKPG TPVEQVYPLV EGTTPVEMVL VMTVEPGFGG QKFMPDMMDK VRALRQKYPT LDIQVDGGLG PSTIDTAAAA GANCIVAGSS
201: VFGAPEPGDV ISLLRTSVEK AQPTT

Arabidopsis Description

Ribulose-phosphate 3-epimerase [Source:UniProtKB/TrEMBL;Acc:Q94K13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.