Factsheet for Solyc05g007260.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059351	Potato	plastid	70.37	96.82
VIT_14s0171g00130.t01	Wine grape	cytosol	85.65	83.33
KRH06978	Soybean	nucleus	83.8	79.39
KRG94486	Soybean	nucleus	83.33	78.95
TraesCS5D01G292800.2	Wheat	cytosol	82.41	78.76
TraesCS5A01G285400.1	Wheat	cytosol	82.41	78.76
EER99152	Sorghum	cytosol	81.94	78.67
TraesCS5B01G284600.1	Wheat	cytosol	81.94	76.96
Os09t0505700-02	Rice	cytosol, plastid	80.56	76.32
AT3G01850.2	Thale cress	cytosol	75.46	72.44
AT1G63290.1	Thale cress	cytosol	75.93	72.25
Zm00001d021050_P002	Maize	extracellular	81.02	70.85
Bra027631.1-P	Field mustard	cytosol	79.17	60.85
HORVU5Hr1G076140.7	Barley	mitochondrion, plastid	80.56	60.84
CDY47340	Canola	plastid	79.17	54.81
CDY49188	Canola	plastid	78.7	53.8
GSMUA_Achr11P...	Banana	cytosol	79.17	53.27
Solyc03g115820.2.1	Tomato	plastid	43.52	33.33

Protein Annotations

KEGG:00030+5.1.3.1	KEGG:00040+5.1.3.1	KEGG:00710+5.1.3.1	Gene3D:3.20.20.70	MapMan:3.9.2.2	InterPro:Aldolase_TIM
GO:GO:0003674	GO:GO:0003824	GO:GO:0004750	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005975	GO:GO:0006098	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009052	GO:GO:0009056	GO:GO:0009987	GO:GO:0016853
GO:GO:0016857	GO:GO:0019323	GO:GO:0044262	GO:GO:0046872	InterPro:IPR013785	UniProt:K4BWQ2
PFAM:PF00834	PIRSF:PIRSF001461	ScanProsite:PS01085	ScanProsite:PS01086	PANTHER:PTHR11749	PANTHER:PTHR11749:SF3
InterPro:Ribul_P_3_epim	InterPro:Ribul_P_3_epim-like	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	EnsemblPlantsGene:Solyc05g007260.2	EnsemblPlants:Solyc05g007260.2.1
TIGRFAMs:TIGR01163	UniParc:UPI0002765AA0	:	:	:	:

Description

Ribulose-phosphate 3-epimerase [Source:UniProtKB/TrEMBL;Acc:K4BWQ2]

Coordinates

chr5:-:1925294..1928969

Molecular Weight (calculated)

23355.2 Da

IEP (calculated)

4.926

GRAVY (calculated)

-0.089

Length

216 amino acids

Sequence
(BLAST)

001: MLSSDFANLA SEAERMLNCG ADWLHMDIMD GHFVPNLTLG APIIESLRKH TKAYLDCHLM VTNPLDYVEP LGKAGASGFT FHIEASRDNW QELVQRIKSK
101: GMKPGVSLKP GTPIEEVYPL LDGENAIELV LVMTVEPGFG GQKFMPEMMD KVHTLRKKYP SLDIEVDGGL GPSTIEAATS AGANCIVAGS SVFGAPDPAQ
201: VITLLRGSVE EAQKRS

Best Arabidopsis Sequence Match ( AT3G01850.1 )
(BLAST)

001: MVSPKIAPSM LSSDFANLAA EANRMIDLGA NWLHMDIMDG HFVPNLTIGA PVIESLRKHT NAYLDCHLMV TNPMDYVAQM AKAGASGFTF HVEVAQDNWQ
101: QLVEKIKSTG MRPGVALKPG TPVEQVYPLV EGTTPVEMVL VMTVEPGFGG QKFMPDMMDK VRALRQKYPT LDIQVDGGLG PSTIDTAAAA GANCIVAGSS
201: VFGAPEPGDV ISLLRTSVEK AQPTT

Arabidopsis Description

Ribulose-phosphate 3-epimerase [Source:UniProtKB/TrEMBL;Acc:Q94K13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.