Factsheet for VIT_14s0171g00130.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94486	Soybean	nucleus	88.74	86.4
KRH06978	Soybean	nucleus	88.29	85.96
Solyc05g007260.2.1	Tomato	cytosol, extracellular	83.33	85.65
PGSC0003DMT400059351	Potato	plastid	60.36	85.35
EER99152	Sorghum	cytosol	84.68	83.56
TraesCS5D01G292800.2	Wheat	cytosol	83.78	82.3
TraesCS5A01G285400.1	Wheat	cytosol	83.78	82.3
AT3G01850.2	Thale cress	cytosol	83.33	82.22
Os09t0505700-02	Rice	cytosol, plastid	84.23	82.02
AT1G63290.1	Thale cress	cytosol	83.78	81.94
TraesCS5B01G284600.1	Wheat	cytosol	83.33	80.43
Zm00001d021050_P002	Maize	extracellular	83.78	75.3
Bra027631.1-P	Field mustard	cytosol	85.59	67.62
HORVU5Hr1G076140.7	Barley	mitochondrion, plastid	81.98	63.64
CDY47340	Canola	plastid	85.59	60.9
CDY49188	Canola	plastid	85.14	59.81
GSMUA_Achr11P...	Banana	cytosol	85.59	59.19
VIT_17s0000g06450.t01	Wine grape	plastid	37.39	27.76

Protein Annotations

KEGG:00030+5.1.3.1	KEGG:00040+5.1.3.1	KEGG:00710+5.1.3.1	EntrezGene:100242409	wikigene:100242409	Gene3D:3.20.20.70
MapMan:3.9.2.2	InterPro:Aldolase_TIM	ProteinID:CCB62218	ProteinID:CCB62218.1	ncoils:Coil	UniProt:F6I5K0
EMBL:FN596749	GO:GO:0003674	GO:GO:0003824	GO:GO:0004750	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005975	GO:GO:0006098
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009052	GO:GO:0009056	GO:GO:0009987
GO:GO:0016853	GO:GO:0016857	GO:GO:0019323	GO:GO:0044262	GO:GO:0046872	InterPro:IPR013785
EntrezGene:LOC100242409	wikigene:LOC100242409	PFAM:PF00834	PIRSF:PIRSF001461	ScanProsite:PS01085	ScanProsite:PS01086
PANTHER:PTHR11749	PANTHER:PTHR11749:SF3	InterPro:Ribul_P_3_epim	InterPro:Ribul_P_3_epim-like	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366
TIGRFAMs:TIGR01163	UniParc:UPI0001984C84	ArrayExpress:VIT_14s0171g00130	EnsemblPlantsGene:VIT_14s0171g00130	EnsemblPlants:VIT_14s0171g00130.t01	RefSeq:XP_002263010
RefSeq:XP_002263010.1	RefSeq:XP_019080820.1	:	:	:	:

Description

Ribulose-phosphate 3-epimerase [Source:UniProtKB/TrEMBL;Acc:F6I5K0]

Coordinates

chr14:+:26002602..26007066

Molecular Weight (calculated)

24043.2 Da

IEP (calculated)

4.943

GRAVY (calculated)

-0.041

Length

222 amino acids

Sequence
(BLAST)

001: MAPAKIAPSM LSSDFANLAS EAQRMLSFGA DWLHMDIMDG HFVPNLTIGA PVIESLRKHT NAYLDCHLMV TNPLDYVEPL GKAGASGFTF HVEVSKENWQ
101: ELVERIRSKG MRPGVALKPG TPIEEVYPLV EGENPVEMVL VMTVEPGFGG QKFMPEMMDK VRALRKKYPS LDIEVDGGLG PSTIDMAASA GANCIVAGSS
201: VFGAPKPEQV ISLLRKSVEE AQ

Best Arabidopsis Sequence Match ( AT3G01850.1 )
(BLAST)

001: MVSPKIAPSM LSSDFANLAA EANRMIDLGA NWLHMDIMDG HFVPNLTIGA PVIESLRKHT NAYLDCHLMV TNPMDYVAQM AKAGASGFTF HVEVAQDNWQ
101: QLVEKIKSTG MRPGVALKPG TPVEQVYPLV EGTTPVEMVL VMTVEPGFGG QKFMPDMMDK VRALRQKYPT LDIQVDGGLG PSTIDTAAAA GANCIVAGSS
201: VFGAPEPGDV ISLLRTSVEK AQPTT

Arabidopsis Description

Ribulose-phosphate 3-epimerase [Source:UniProtKB/TrEMBL;Acc:Q94K13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.