CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 5
plastid 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plastid

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06978	Soybean	nucleus	93.42	93.42
VIT_14s0171g00130.t01	Wine grape	cytosol	86.4	88.74
Solyc05g007260.2.1	Tomato	cytosol, extracellular	78.95	83.33
PGSC0003DMT400059351	Potato	plastid	56.58	82.17
AT3G01850.2	Thale cress	cytosol	79.82	80.89
EER99152	Sorghum	cytosol	79.82	80.89
Os09t0505700-02	Rice	cytosol, plastid	80.7	80.7
TraesCS5D01G292800.2	Wheat	cytosol	79.82	80.53
AT1G63290.1	Thale cress	cytosol	79.82	80.18
TraesCS5A01G285400.1	Wheat	cytosol	79.39	80.09
TraesCS5B01G284600.1	Wheat	cytosol	78.95	78.26
Zm00001d021050_P002	Maize	extracellular	78.95	72.87
Bra027631.1-P	Field mustard	cytosol	81.58	66.19
HORVU5Hr1G076140.7	Barley	mitochondrion, plastid	78.51	62.59
CDY47340	Canola	plastid	81.58	59.62
CDY49188	Canola	plastid	81.14	58.54
GSMUA_Achr11P...	Banana	cytosol	81.14	57.63
KRH03501	Soybean	plastid	37.72	30.71
KRH56893	Soybean	plastid	37.72	30.71

Protein Annotations

KEGG:00030+5.1.3.1	KEGG:00040+5.1.3.1	KEGG:00710+5.1.3.1	EntrezGene:100500085	Gene3D:3.20.20.70	MapMan:3.9.2.2
EMBL:ACUP02011965	InterPro:Aldolase_TIM	EnsemblPlantsGene:GLYMA_19G088400	GO:GO:0003674	GO:GO:0003824	GO:GO:0004750
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005975	GO:GO:0006098	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009052
GO:GO:0009056	GO:GO:0009987	GO:GO:0016853	GO:GO:0016857	GO:GO:0019323	GO:GO:0044262
GO:GO:0046872	UniProt:I1N7P3	InterPro:IPR013785	EnsemblPlants:KRG94486	ProteinID:KRG94486	ProteinID:KRG94486.1
PFAM:PF00834	PIRSF:PIRSF001461	ScanProsite:PS01085	ScanProsite:PS01086	PANTHER:PTHR11749	PANTHER:PTHR11749:SF3
MetaCyc:PWY-1861	MetaCyc:PWY-5723	InterPro:Ribul_P_3_epim	InterPro:Ribul_P_3_epim-like	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366
TIGRFAMs:TIGR01163	UniParc:UPI0001CAE708	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:31438800..31444776

Molecular Weight (calculated)

24642.0 Da

IEP (calculated)

5.278

GRAVY (calculated)

0.032

Length

228 amino acids

Sequence
(BLAST)

001: MGVTPKIAPS MLSSDFANLA SEAQRMLHFG ADWLHMDIMD GHFVPNLTIG APVIESLRKH TKGYLDCHLM VTNPLDYVEP LAKAGASGFT FHVETSKDNW
101: EELIQRIKSH GMTPGVALKP GTPIEEVYPL VEAGNPVEMV LVMTVEPGFG GQKFMPEMMD KVRILRKKYP SLDIEVDGGL GPSTIDVAAS AGANCIVAGS
201: SVFGAPEPVQ VISLLRNSVE KAQQTLIQ

Best Arabidopsis Sequence Match ( AT3G01850.1 )
(BLAST)

001: MVSPKIAPSM LSSDFANLAA EANRMIDLGA NWLHMDIMDG HFVPNLTIGA PVIESLRKHT NAYLDCHLMV TNPMDYVAQM AKAGASGFTF HVEVAQDNWQ
101: QLVEKIKSTG MRPGVALKPG TPVEQVYPLV EGTTPVEMVL VMTVEPGFGG QKFMPDMMDK VRALRQKYPT LDIQVDGGLG PSTIDTAAAA GANCIVAGSS
201: VFGAPEPGDV ISLLRTSVEK AQPTT

Arabidopsis Description

Ribulose-phosphate 3-epimerase [Source:UniProtKB/TrEMBL;Acc:Q94K13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.