Factsheet for Zm00001d021050_P002

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, plastid, secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plastid

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99152	Sorghum	cytosol	90.28	99.11
Os09t0505700-02	Rice	cytosol, plastid	84.62	91.67
TraesCS5A01G285400.1	Wheat	cytosol	82.59	90.27
TraesCS5D01G292800.2	Wheat	cytosol	82.19	89.82
TraesCS5B01G284600.1	Wheat	cytosol	82.19	88.26
VIT_14s0171g00130.t01	Wine grape	cytosol	75.3	83.78
Solyc05g007260.2.1	Tomato	cytosol, extracellular	70.85	81.02
KRH06978	Soybean	nucleus	73.28	79.39
KRG94486	Soybean	nucleus	72.87	78.95
PGSC0003DMT400059351	Potato	plastid	49.8	78.34
AT3G01850.2	Thale cress	cytosol	70.04	76.89
AT1G63290.1	Thale cress	cytosol	69.64	75.77
HORVU5Hr1G076140.7	Barley	mitochondrion, plastid	80.97	69.93
Bra027631.1-P	Field mustard	cytosol	72.06	63.35
CDY47340	Canola	plastid	72.06	57.05
GSMUA_Achr11P...	Banana	cytosol	73.28	56.39
CDY49188	Canola	plastid	71.66	56.01
Zm00001d027841_P002	Maize	plastid	36.44	32.85
Zm00001d048324_P001	Maize	plastid	36.03	28.62

Protein Annotations

KEGG:00030+5.1.3.1	KEGG:00040+5.1.3.1	KEGG:00710+5.1.3.1	Gene3D:3.20.20.70	MapMan:3.9.2.2	UniProt:A0A1D6I841
InterPro:Aldolase_TIM	GO:GO:0003674	GO:GO:0003824	GO:GO:0004750	GO:GO:0005488	GO:GO:0005975
GO:GO:0006098	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853
GO:GO:0016857	GO:GO:0046872	InterPro:IPR013785	ProteinID:ONM56214.1	PFAM:PF00834	PIRSF:PIRSF001461
ScanProsite:PS01085	ScanProsite:PS01086	PANTHER:PTHR11749	PANTHER:PTHR11749:SF3	InterPro:Ribul_P_3_epim	InterPro:Ribul_P_3_epim-like
InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	UniParc:UPI000842C2DE	EnsemblPlantsGene:Zm00001d021050	EnsemblPlants:Zm00001d021050_P002	EnsemblPlants:Zm00001d021050_T002

Description

Ribulose-phosphate 3-epimerase

Coordinates

chr7:-:141288160..141292427

Molecular Weight (calculated)

26633.2 Da

IEP (calculated)

5.626

GRAVY (calculated)

-0.019

Length

247 amino acids

Sequence
(BLAST)

001: MAAAKIAPSM LSSDFANLAS EAERMVRLGA DWLHMDIMDG HFVPNLTIGA PVIQSLRKHT KAYLDCHLMV TKPSDYVEPF GKAGASGFTF HIEVARGEHT
101: SVEWPSIFSS PLMEKLYADN WQDLIQSIKS KGMRPGVSLR PGTPVEEVFP LVEAENPVEL VLVMTVEPGF GGQKFMPEMM DKVRTLRKKY PSLDIEVDGG
201: LGPSTIDVAA SAGANCIVAG SSIFGAADPG AIISVLRKSV EGSQNKN

Best Arabidopsis Sequence Match ( AT3G01850.1 )
(BLAST)

001: MVSPKIAPSM LSSDFANLAA EANRMIDLGA NWLHMDIMDG HFVPNLTIGA PVIESLRKHT NAYLDCHLMV TNPMDYVAQM AKAGASGFTF HVEVAQDNWQ
101: QLVEKIKSTG MRPGVALKPG TPVEQVYPLV EGTTPVEMVL VMTVEPGFGG QKFMPDMMDK VRALRQKYPT LDIQVDGGLG PSTIDTAAAA GANCIVAGSS
201: VFGAPEPGDV ISLLRTSVEK AQPTT

Arabidopsis Description

Ribulose-phosphate 3-epimerase [Source:UniProtKB/TrEMBL;Acc:Q94K13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.