Factsheet for Zm00001d048324_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d027841_P002
Zm00001d038652_P003
Zm00001d048324_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61410.1	Zm00001d038652_P003	AT5G42980.1	15352244
AT5G61410.1	Zm00001d027841_P002	AT5G61410.1	21798944
AT5G61410.1	Zm00001d048324_P001	AT5G61410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027841_P002	Maize	plastid	82.32	93.43
Os03t0169100-01	Rice	plastid	75.56	85.77
Bra029310.1-P	Field mustard	cytosol	21.22	85.71
EER92786	Sorghum	extracellular, plastid	72.35	81.82
TraesCS4D01G283800.1	Wheat	golgi, plastid	71.7	81.69
TraesCS4B01G285000.1	Wheat	plastid	71.7	81.69
TraesCS4A01G019100.1	Wheat	plastid	71.7	81.69
KRH56893	Soybean	plastid	70.42	78.21
KRH03501	Soybean	plastid	69.77	77.5
Bra009244.1-P	Field mustard	plastid	68.17	77.09
CDX98974	Canola	plastid	68.17	77.09
CDX70050	Canola	plastid	68.17	77.09
GSMUA_Achr2P21940_001	Banana	plastid	69.77	76.68
GSMUA_Achr6P10790_001	Banana	plastid	68.81	75.89
Solyc03g115820.2.1	Tomato	plastid	68.49	75.53
AT5G61410.1	Thale cress	plastid	68.17	75.44
CDY64139	Canola	plastid	68.17	74.91
CDY02150	Canola	plastid	67.85	74.82
Bra012963.1-P	Field mustard	plastid	67.85	74.82
PGSC0003DMT400050256	Potato	plastid	68.17	74.39
VIT_17s0000g06450.t01	Wine grape	plastid	69.77	72.58
CDY71665	Canola	plastid	48.55	63.18
Bra012962.1-P	Field mustard	plastid	42.77	57.58
HORVU4Hr1G074810.3	Barley	cytosol, plastid	58.84	56.48
Zm00001d021050_P002	Maize	extracellular	28.62	36.03

Protein Annotations

KEGG:00030+5.1.3.1	KEGG:00040+5.1.3.1	KEGG:00710+5.1.3.1	MapMan:50.5.1	UniProt:A0A1D6PJ99	ProteinID:AQL09393.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016857
PFAM:PF00834	ScanProsite:PS01085	ScanProsite:PS01086	PANTHER:PTHR11749	PANTHER:PTHR11749:SF4	InterPro:Ribul_P_3_epim-like
InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	UniParc:UPI0008429AA3	EnsemblPlantsGene:Zm00001d048324	EnsemblPlants:Zm00001d048324_P001	EnsemblPlants:Zm00001d048324_T001
SEG:seg	:	:	:	:	:

Description

Ribulose-phosphate 3-epimerase

Coordinates

chr9:-:154490005..154493752

Molecular Weight (calculated)

33502.6 Da

IEP (calculated)

6.710

GRAVY (calculated)

0.213

Length

311 amino acids

Sequence
(BLAST)

001: MATPSSSLCS SFASLRTASI GHPRGIASST PRKAFQVRAS ARVDKFSKSD IIVSPSILSA NFAKLGDQVK AVEVAGCDWI HVDVMDGRFV PNITIGPLVV
101: DALRPVTDLP LDVHLMIVEP EQRVPDFIKA GADIVSVHCE QTSTIHLHRT VNQIFENHWD VLLSFILVAC CKLELSYLST IYQIKSLGAK AGVVLNPATP
201: LNAIDYILDV VDLVLIMSVN PGFGGQSFIE SQVRKIAELR RLCAEKGVNP WIEVDGGVGP KNAYKVIEAG ANAIVAGSAV FGAPDYAEGM LSKESRPAKG
301: LQLYTHKELD V

Best Arabidopsis Sequence Match ( AT5G61410.2 )
(BLAST)

001: MSTSAASLCC SSTQVNGFGL RPERSLLYQP TSFSFSRRRT HGIVKASSRV DRFSKSDIIV SPSILSANFA KLGEQVKAVE LAGCDWIHVD VMDGRFVPNI
101: TIGPLVVDAL RPVTDLPLDV HLMIVEPEQR VPDFIKAGAD IVSVHCEQQS TIHLHRTVNQ IKSLGAKAGV VLNPGTPLSA IEYVLDMVDL VLIMSVNPGF
201: GGQSFIESQV KKISDLRKMC AEKGVNPWIE VDGGVTPANA YKVIEAGANA LVAGSAVFGA KDYAEAIKGI KASKRPAAVA V

Arabidopsis Description

RPERPE [Source:UniProtKB/TrEMBL;Acc:A0A178UPG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.