CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70050
CDX98974
CDY02150
CDY32970
CDY43592
CDY64139
CDY71665

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61410.1	CDY32970	AT5G42980.1	15352244
AT5G61410.1	CDY43592	AT5G42980.1	15352244
AT5G61410.1	CDX70050	AT5G61410.1	21798944
AT5G61410.1	CDX98974	AT5G61410.1	21798944
AT5G61410.1	CDY02150	AT5G61410.1	21798944
AT5G61410.1	CDY64139	AT5G61410.1	21798944
AT5G61410.1	CDY71665	AT5G61410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029310.1-P	Field mustard	cytosol	30.96	96.1
CDX70050	Canola	plastid	72.38	62.91
CDX98974	Canola	plastid	71.97	62.55
CDY64139	Canola	plastid	74.06	62.54
CDY02150	Canola	plastid	73.22	62.06
AT5G61410.1	Thale cress	plastid	71.97	61.21
Solyc03g115820.2.1	Tomato	plastid	69.04	58.51
PGSC0003DMT400050256	Potato	plastid	69.46	58.25
KRH56893	Soybean	plastid	68.2	58.21
TraesCS4D01G283800.1	Wheat	golgi, plastid	66.11	57.88
TraesCS4B01G285000.1	Wheat	plastid	66.11	57.88
TraesCS4A01G019100.1	Wheat	plastid	66.11	57.88
KRH03501	Soybean	plastid	67.78	57.86
Zm00001d027841_P002	Maize	plastid	66.11	57.66
Os03t0169100-01	Rice	plastid	65.69	57.3
GSMUA_Achr6P10790_001	Banana	plastid	65.69	55.67
EER92786	Sorghum	extracellular, plastid	64.02	55.64
VIT_17s0000g06450.t01	Wine grape	plastid	64.85	51.84
GSMUA_Achr2P21940_001	Banana	plastid	60.67	51.24
Zm00001d048324_P001	Maize	plastid	63.18	48.55
HORVU4Hr1G074810.3	Barley	cytosol, plastid	47.28	34.88
CDY47340	Canola	plastid	25.94	19.87
CDY49188	Canola	plastid	25.52	19.3

Protein Annotations

KEGG:00030+5.1.3.1	KEGG:00040+5.1.3.1	KEGG:00710+5.1.3.1	Gene3D:3.20.20.70	MapMan:35.1	GO:A0A078JZ28
UniProt:A0A078JZ28	InterPro:Aldolase_TIM	EnsemblPlants:CDY71665	ProteinID:CDY71665	ProteinID:CDY71665.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016857	EnsemblPlantsGene:GSBRNA2T00017925001
InterPro:IPR013785	PFAM:PF00834	PANTHER:PTHR11749	PANTHER:PTHR11749:SF4	MetaCyc:PWY-1861	MetaCyc:PWY-5723
InterPro:Ribul_P_3_epim-like	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	UniParc:UPI0004EDEF15	:	:

Description

BnaAnng38360DBnaAnng38360D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JZ28]

Coordinates

chrLK046846:-:335..2028

Molecular Weight (calculated)

25783.0 Da

IEP (calculated)

9.644

GRAVY (calculated)

-0.054

Length

239 amino acids

Sequence
(BLAST)

001: NDLVGGFSSV LTLKVKTHQQ TLLGFCLKEK KTTSTQQVNG FSLRPQRSLL YQQPTSFSFS RRRAHGVVKA SARVDKFSKS DIIVSPSILS ANFAKLGEQV
101: KAVELAGCDW IHVDRHVTDL PLDVHLMIVE PDQRVPDFIK AGADIVSVHC EQSSTIHLHR TVNQIKSLGA NAGVVLNPET PLNAIEYILD GGVTPKNAYK
201: VIEAGANALV AGSAVFGAKD YAEAIKGIKT SKKPEAVAV

Best Arabidopsis Sequence Match ( AT5G61410.2 )
(BLAST)

001: MSTSAASLCC SSTQVNGFGL RPERSLLYQP TSFSFSRRRT HGIVKASSRV DRFSKSDIIV SPSILSANFA KLGEQVKAVE LAGCDWIHVD VMDGRFVPNI
101: TIGPLVVDAL RPVTDLPLDV HLMIVEPEQR VPDFIKAGAD IVSVHCEQQS TIHLHRTVNQ IKSLGAKAGV VLNPGTPLSA IEYVLDMVDL VLIMSVNPGF
201: GGQSFIESQV KKISDLRKMC AEKGVNPWIE VDGGVTPANA YKVIEAGANA LVAGSAVFGA KDYAEAIKGI KASKRPAAVA V

Arabidopsis Description

RPERPE [Source:UniProtKB/TrEMBL;Acc:A0A178UPG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.