Factsheet for PGSC0003DMT400050256

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400050256

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61410.1	PGSC0003DMT400050256	AT5G61410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g115820.2.1	Tomato	plastid	96.49	97.52
Bra029310.1-P	Field mustard	cytosol	23.86	88.31
KRH03501	Soybean	plastid	84.56	86.07
KRH56893	Soybean	plastid	83.16	84.64
Bra009244.1-P	Field mustard	plastid	79.3	82.18
CDX70050	Canola	plastid	79.3	82.18
CDX98974	Canola	plastid	78.95	81.82
Zm00001d027841_P002	Maize	plastid	77.89	81.02
Os03t0169100-01	Rice	plastid	77.89	81.02
CDY02150	Canola	plastid	79.65	80.5
Bra012963.1-P	Field mustard	plastid	79.65	80.5
AT5G61410.1	Thale cress	plastid	79.3	80.43
TraesCS4D01G283800.1	Wheat	golgi, plastid	76.84	80.22
TraesCS4B01G285000.1	Wheat	plastid	76.84	80.22
TraesCS4A01G019100.1	Wheat	plastid	76.84	80.22
CDY64139	Canola	plastid	79.65	80.21
EER92786	Sorghum	extracellular, plastid	75.44	78.18
GSMUA_Achr6P10790_001	Banana	plastid	77.19	78.01
VIT_17s0000g06450.t01	Wine grape	plastid	79.65	75.92
GSMUA_Achr2P21940_001	Banana	plastid	74.04	74.56
CDY71665	Canola	plastid	58.25	69.46
Zm00001d048324_P001	Maize	plastid	74.39	68.17
Bra012962.1-P	Field mustard	plastid	48.77	60.17
HORVU4Hr1G074810.3	Barley	cytosol, plastid	58.95	51.85
PGSC0003DMT400059351	Potato	plastid	23.86	43.31

Protein Annotations

KEGG:00030+5.1.3.1	KEGG:00040+5.1.3.1	KEGG:00710+5.1.3.1	MapMan:1.2.10	EntrezGene:102594969	PDB:1RPX
Gene3D:3.20.20.70	InterPro:Aldolase_TIM	ProteinID:CAA90426	ProteinID:CAA90426.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004750	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005975	GO:GO:0006098	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016853	GO:GO:0016857	GO:GO:0019253	GO:GO:0046872	InterPro:IPR013785
UniProt:M1BQ11	PFAM:PF00834	EnsemblPlantsGene:PGSC0003DMG400019521	PGSC:PGSC0003DMG400019521	EnsemblPlants:PGSC0003DMT400050256	ScanProsite:PS01085
ScanProsite:PS01086	PANTHER:PTHR11749	PANTHER:PTHR11749:SF4	InterPro:Ribul_P_3_epim-like	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366
TIGRFAMs:TIGR01163	UniParc:UPI000296051C	RefSeq:XP_006364582.1	EMBL:Z50098	SEG:seg	:

Description

Ribulose-phosphate 3-epimerase, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400019521]

Coordinates

chr3:-:55675640..55682005

Molecular Weight (calculated)

30344.7 Da

IEP (calculated)

8.085

GRAVY (calculated)

0.110

Length

285 amino acids

Sequence
(BLAST)

001: MATASSLGSS TLLQSQISGF GGSQKLQKIS FSNPNSLTFT RRRIQTVVNA SSRVDKFSKS DIIVSPSILS ANFSKLGEQV KAIEQAGCDW IHVDVMDGRF
101: VPNITIGPLV VDSLRPITDL PLDVHLMIVE PDQRVPDFIK AGADIVSVHC EQSSTIHLHR TINQIKSLGA KAGVVLNPGT PLTAIEYVLD AVDLVLIMSV
201: NPGFGGQSFI ESQVKKISDL RKICAERGLN PWIEVDGGVG PKNAYKVIEA GANALVAGSA VFGAPDYAEA IKGIKTSKRP EAVAV

Best Arabidopsis Sequence Match ( AT5G61410.2 )
(BLAST)

001: MSTSAASLCC SSTQVNGFGL RPERSLLYQP TSFSFSRRRT HGIVKASSRV DRFSKSDIIV SPSILSANFA KLGEQVKAVE LAGCDWIHVD VMDGRFVPNI
101: TIGPLVVDAL RPVTDLPLDV HLMIVEPEQR VPDFIKAGAD IVSVHCEQQS TIHLHRTVNQ IKSLGAKAGV VLNPGTPLSA IEYVLDMVDL VLIMSVNPGF
201: GGQSFIESQV KKISDLRKMC AEKGVNPWIE VDGGVTPANA YKVIEAGANA LVAGSAVFGA KDYAEAIKGI KASKRPAAVA V

Arabidopsis Description

RPERPE [Source:UniProtKB/TrEMBL;Acc:A0A178UPG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.