Factsheet for GSMUA_Achr6P10790_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P21940_001
GSMUA_Achr6P10790_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61410.1	GSMUA_Achr2P21940_001	AT5G61410.1	21798944
AT5G61410.1	GSMUA_Achr6P10790_001	AT5G61410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029310.1-P	Field mustard	cytosol	23.05	84.42
GSMUA_Achr2P21940_001	Banana	plastid	84.04	83.75
KRH56893	Soybean	plastid	82.98	83.57
KRH03501	Soybean	plastid	82.27	82.86
Zm00001d027841_P002	Maize	plastid	79.79	82.12
AT5G61410.1	Thale cress	plastid	81.21	81.49
Bra009244.1-P	Field mustard	plastid	79.43	81.45
CDX70050	Canola	plastid	79.43	81.45
CDX98974	Canola	plastid	79.08	81.09
Os03t0169100-01	Rice	plastid	78.01	80.29
EER92786	Sorghum	extracellular, plastid	78.01	80.0
CDY64139	Canola	plastid	79.08	78.8
TraesCS4A01G019100.1	Wheat	plastid	76.24	78.75
TraesCS4B01G285000.1	Wheat	plastid	76.24	78.75
TraesCS4D01G283800.1	Wheat	golgi, plastid	76.24	78.75
Bra012963.1-P	Field mustard	plastid	78.72	78.72
CDY02150	Canola	plastid	78.72	78.72
Solyc03g115820.2.1	Tomato	plastid	78.72	78.72
PGSC0003DMT400050256	Potato	plastid	78.01	77.19
VIT_17s0000g06450.t01	Wine grape	plastid	77.31	72.91
Zm00001d048324_P001	Maize	plastid	75.89	68.81
CDY71665	Canola	plastid	55.67	65.69
Bra012962.1-P	Field mustard	plastid	48.58	59.31
HORVU4Hr1G074810.3	Barley	cytosol, plastid	58.51	50.93
GSMUA_Achr11P...	Banana	cytosol	31.21	27.41

Protein Annotations

KEGG:00030+5.1.3.1	KEGG:00040+5.1.3.1	KEGG:00710+5.1.3.1	MapMan:1.2.10	Gene3D:3.20.20.70	InterPro:Aldolase_TIM
GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016857
EnsemblPlantsGene:GSMUA_Achr6G10790_001	EnsemblPlants:GSMUA_Achr6P10790_001	EnsemblPlants:GSMUA_Achr6T10790_001	InterPro:IPR013785	UniProt:M0T5X8	PFAM:PF00834
ScanProsite:PS01085	ScanProsite:PS01086	PANTHER:PTHR11749	PANTHER:PTHR11749:SF4	InterPro:Ribul_P_3_epim-like	InterPro:RibuloseP-bd_barrel
SUPFAM:SSF51366	TIGRFAMs:TIGR01163	UniParc:UPI000296C62A	SEG:seg	:	:

Description

Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr6G10790_001]

Coordinates

chr6:+:7185856..7191582

Molecular Weight (calculated)

29924.5 Da

IEP (calculated)

9.683

GRAVY (calculated)

0.210

Length

282 amino acids

Sequence
(BLAST)

001: MITTAAASSS SAMAIAVPHR GRLRRLSLSP PPDSIGVRRK LQTVVKASAR VERYSKSDII VSPSILSANF AKLGEQVKAV EVAGCDWIHV DVMDGRFVPN
101: ITIGPLVVDA LRPVTNLPLD VHLMIVEPEQ RVPDFIKAGA DIVSVHCEQS STIHLHRTVN QVKSLGAKAG IVLNPATPLS AIEYVLDVVD LVLIMSVNPG
201: FGGQSFIESQ VKKISELRRL CAEKGVNPWI EVDGGVGPSN AYKVIEAGAN AIVAGSAVFG AKNYAEAIKG IKTSKRPTAV AV

Best Arabidopsis Sequence Match ( AT5G61410.2 )
(BLAST)

001: MSTSAASLCC SSTQVNGFGL RPERSLLYQP TSFSFSRRRT HGIVKASSRV DRFSKSDIIV SPSILSANFA KLGEQVKAVE LAGCDWIHVD VMDGRFVPNI
101: TIGPLVVDAL RPVTDLPLDV HLMIVEPEQR VPDFIKAGAD IVSVHCEQQS TIHLHRTVNQ IKSLGAKAGV VLNPGTPLSA IEYVLDMVDL VLIMSVNPGF
201: GGQSFIESQV KKISDLRKMC AEKGVNPWIE VDGGVTPANA YKVIEAGANA LVAGSAVFGA KDYAEAIKGI KASKRPAAVA V

Arabidopsis Description

RPERPE [Source:UniProtKB/TrEMBL;Acc:A0A178UPG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.