Factsheet for Os03t0169100-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 17189339
extracellular: 23159799
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0169100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61410.1	Os03t0169100-01	AT5G61410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027841_P002	Maize	plastid	91.24	91.24
Bra029310.1-P	Field mustard	cytosol	24.45	87.01
TraesCS4A01G019100.1	Wheat	plastid	85.4	85.71
TraesCS4D01G283800.1	Wheat	golgi, plastid	85.4	85.71
TraesCS4B01G285000.1	Wheat	plastid	85.4	85.71
EER92786	Sorghum	extracellular, plastid	85.77	85.45
KRH56893	Soybean	plastid	82.48	80.71
Bra009244.1-P	Field mustard	plastid	80.66	80.36
CDX70050	Canola	plastid	80.66	80.36
CDX98974	Canola	plastid	80.66	80.36
KRH03501	Soybean	plastid	81.75	80.0
Solyc03g115820.2.1	Tomato	plastid	82.12	79.79
CDY64139	Canola	plastid	81.75	79.15
CDY02150	Canola	plastid	80.66	78.37
Bra012963.1-P	Field mustard	plastid	80.66	78.37
AT5G61410.1	Thale cress	plastid	80.29	78.29
GSMUA_Achr6P10790_001	Banana	plastid	80.29	78.01
PGSC0003DMT400050256	Potato	plastid	81.02	77.89
GSMUA_Achr2P21940_001	Banana	plastid	78.83	76.33
Zm00001d048324_P001	Maize	plastid	85.77	75.56
VIT_17s0000g06450.t01	Wine grape	plastid	77.01	70.57
CDY71665	Canola	plastid	57.3	65.69
Bra012962.1-P	Field mustard	plastid	49.27	58.44
HORVU4Hr1G074810.3	Barley	cytosol, plastid	67.52	57.1
Os09t0505700-02	Rice	cytosol, plastid	32.12	38.6

Protein Annotations

KEGG:00030+5.1.3.1	KEGG:00040+5.1.3.1	KEGG:00710+5.1.3.1	MapMan:1.2.10	Gene3D:3.20.20.70	EntrezGene:4331761
ProteinID:AAL84303.1	ProteinID:ABF94188.1	EMBL:AF047444	EMBL:AK061772	EMBL:AK066306	EMBL:AK099215
InterPro:Aldolase_TIM	ProteinID:BAF11010.1	ProteinID:BAS82507.1	ProteinID:EEE58398.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004750	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005975	GO:GO:0006098	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009052	GO:GO:0009056	GO:GO:0009058	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016853	GO:GO:0016857
GO:GO:0019253	GO:GO:0019323	GO:GO:0044262	GO:GO:0046872	InterPro:IPR013785	EnsemblPlantsGene:Os03g0169100
EnsemblPlants:Os03t0169100-01	PFAM:PF00834	PIRSF:PIRSF001461	ScanProsite:PS01085	ScanProsite:PS01086	PANTHER:PTHR11749
PANTHER:PTHR11749:SF4	UniProt:Q9ZTP5	InterPro:Ribul_P_3_epim	InterPro:Ribul_P_3_epim-like	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366
TIGRFAMs:TIGR01163	UniParc:UPI00000A574F	RefSeq:XP_015630737.1	SEG:seg	:	:

Description

D-ribulose-5-phosphate 3-epimerase, chl-RPEase, chloroplast RPEase, chloroplast D-Ribulose-5-phosphate 3-EpimeraseRibulose-phosphate 3-epimerase, chloroplast precursor (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (RPE) (R5P3E). (Os03t0169100-01)

Coordinates

chr3:+:3713990..3717346

Molecular Weight (calculated)

29036.2 Da

IEP (calculated)

8.635

GRAVY (calculated)

0.188

Length

274 amino acids

Sequence
(BLAST)

001: MASPSSSSSL CSTFASPRAA SLGRRLAFSS PRKAFRVRAS SRVDKFSKND IIVSPSILSA NFSKLGEQVK AVEVAGCDWI HVDVMDGRFV PNITIGPLVV
101: DALRPVTDLP LDVHLMIVEP EQRVPDFIKA GADIVSVHCE QSSTIHLHRT VNQIKSLGAK AGVVLNPATP LTAIDYVLDV VDLVLIMSVN PGFGGQSFIE
201: SQVKKIAELR RLCAEKGVNP WIEVDGGVGP KNAYKVIEAG ANAIVAGSAV FGAPDYAEAI KGIKTSQKPV AVPA

Best Arabidopsis Sequence Match ( AT5G61410.2 )
(BLAST)

001: MSTSAASLCC SSTQVNGFGL RPERSLLYQP TSFSFSRRRT HGIVKASSRV DRFSKSDIIV SPSILSANFA KLGEQVKAVE LAGCDWIHVD VMDGRFVPNI
101: TIGPLVVDAL RPVTDLPLDV HLMIVEPEQR VPDFIKAGAD IVSVHCEQQS TIHLHRTVNQ IKSLGAKAGV VLNPGTPLSA IEYVLDMVDL VLIMSVNPGF
201: GGQSFIESQV KKISDLRKMC AEKGVNPWIE VDGGVTPANA YKVIEAGANA LVAGSAVFGA KDYAEAIKGI KASKRPAAVA V

Arabidopsis Description

RPERPE [Source:UniProtKB/TrEMBL;Acc:A0A178UPG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.