Factsheet for GSMUA_Achr2P21940_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P21940_001
GSMUA_Achr6P10790_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61410.1	GSMUA_Achr2P21940_001	AT5G61410.1	21798944
AT5G61410.1	GSMUA_Achr6P10790_001	AT5G61410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P10790_001	Banana	plastid	83.75	84.04
Bra029310.1-P	Field mustard	cytosol	22.61	83.12
KRH56893	Soybean	plastid	78.45	79.29
KRH03501	Soybean	plastid	78.45	79.29
Zm00001d027841_P002	Maize	plastid	76.33	78.83
Os03t0169100-01	Rice	plastid	76.33	78.83
CDX98974	Canola	plastid	76.33	78.55
Bra009244.1-P	Field mustard	plastid	75.97	78.18
CDX70050	Canola	plastid	75.97	78.18
TraesCS4A01G019100.1	Wheat	plastid	74.56	77.29
TraesCS4B01G285000.1	Wheat	plastid	74.56	77.29
TraesCS4D01G283800.1	Wheat	golgi, plastid	74.56	77.29
EER92786	Sorghum	extracellular, plastid	74.91	77.09
CDY64139	Canola	plastid	75.97	75.97
AT5G61410.1	Thale cress	plastid	75.27	75.8
VIT_17s0000g06450.t01	Wine grape	plastid	79.86	75.59
Solyc03g115820.2.1	Tomato	plastid	75.27	75.53
CDY02150	Canola	plastid	74.91	75.18
Bra012963.1-P	Field mustard	plastid	74.91	75.18
PGSC0003DMT400050256	Potato	plastid	74.56	74.04
Zm00001d048324_P001	Maize	plastid	76.68	69.77
CDY71665	Canola	plastid	51.24	60.67
Bra012962.1-P	Field mustard	plastid	48.41	59.31
HORVU4Hr1G074810.3	Barley	cytosol, plastid	60.78	53.09
GSMUA_Achr11P...	Banana	cytosol	30.74	27.1

Protein Annotations

KEGG:00030+5.1.3.1	KEGG:00040+5.1.3.1	KEGG:00710+5.1.3.1	MapMan:1.2.10	Gene3D:3.20.20.70	InterPro:Aldolase_TIM
GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016857
EnsemblPlantsGene:GSMUA_Achr2G21940_001	EnsemblPlants:GSMUA_Achr2P21940_001	EnsemblPlants:GSMUA_Achr2T21940_001	InterPro:IPR013785	UniProt:M0SA35	PFAM:PF00834
ScanProsite:PS01085	ScanProsite:PS01086	PANTHER:PTHR11749	PANTHER:PTHR11749:SF4	InterPro:Ribul_P_3_epim-like	InterPro:RibuloseP-bd_barrel
SUPFAM:SSF51366	TIGRFAMs:TIGR01163	UniParc:UPI0002964D1D	SEG:seg	:	:

Description

Ribulose-phosphate 3-epimerase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr2G21940_001]

Coordinates

chr2:-:21216004..21220839

Molecular Weight (calculated)

30105.3 Da

IEP (calculated)

6.791

GRAVY (calculated)

0.234

Length

283 amino acids

Sequence
(BLAST)

001: MIASATAASS SSLAIAVPHS GRLRKSSLLL SRTNIAVRRN FPSVVKASAR VDKYSKSDII VSPSILSANF SKLGEQVKAV DVAGCDWIHV DVMDGRFVPN
101: ITIGPLVVDA LRPVTDLPLD VHLMIVEPEQ RVPDFIKAGA DIVSVHCEQS STIHLHRTID QVKSLGAKAG VVLNPATPLS AIEYVLDVVD LVLIMSVNPG
201: FGGQSFIESQ VKKISDLRRL CAEKGVNPWI EVDGGVGPSN AYKVIEAGAN AIVAGSAVFG AKDYAEGMDL TFSFSNLNLY TPN

Best Arabidopsis Sequence Match ( AT5G61410.2 )
(BLAST)

001: MSTSAASLCC SSTQVNGFGL RPERSLLYQP TSFSFSRRRT HGIVKASSRV DRFSKSDIIV SPSILSANFA KLGEQVKAVE LAGCDWIHVD VMDGRFVPNI
101: TIGPLVVDAL RPVTDLPLDV HLMIVEPEQR VPDFIKAGAD IVSVHCEQQS TIHLHRTVNQ IKSLGAKAGV VLNPGTPLSA IEYVLDMVDL VLIMSVNPGF
201: GGQSFIESQV KKISDLRKMC AEKGVNPWIE VDGGVTPANA YKVIEAGANA LVAGSAVFGA KDYAEAIKGI KASKRPAAVA V

Arabidopsis Description

RPERPE [Source:UniProtKB/TrEMBL;Acc:A0A178UPG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.