Factsheet for VIT_17s0000g06450.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g06450.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61410.1	VIT_17s0000g06450.t01	AT5G61410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029310.1-P	Field mustard	cytosol	21.74	84.42
KRH03501	Soybean	plastid	78.6	83.93
KRH56893	Soybean	plastid	78.26	83.57
Solyc03g115820.2.1	Tomato	plastid	76.25	80.85
AT5G61410.1	Thale cress	plastid	75.59	80.43
Bra009244.1-P	Field mustard	plastid	73.91	80.36
CDX70050	Canola	plastid	73.91	80.36
CDX98974	Canola	plastid	73.91	80.36
GSMUA_Achr2P21940_001	Banana	plastid	75.59	79.86
PGSC0003DMT400050256	Potato	plastid	75.92	79.65
CDY64139	Canola	plastid	75.25	79.51
Bra012963.1-P	Field mustard	plastid	73.91	78.37
CDY02150	Canola	plastid	73.91	78.37
Zm00001d027841_P002	Maize	plastid	71.24	77.74
GSMUA_Achr6P10790_001	Banana	plastid	72.91	77.31
EER92786	Sorghum	extracellular, plastid	70.9	77.09
Os03t0169100-01	Rice	plastid	70.57	77.01
TraesCS4A01G019100.1	Wheat	plastid	70.23	76.92
TraesCS4B01G285000.1	Wheat	plastid	70.23	76.92
TraesCS4D01G283800.1	Wheat	golgi, plastid	70.23	76.92
Zm00001d048324_P001	Maize	plastid	72.58	69.77
CDY71665	Canola	plastid	51.84	64.85
Bra012962.1-P	Field mustard	plastid	46.15	59.74
HORVU4Hr1G074810.3	Barley	cytosol, plastid	57.19	52.78
VIT_14s0171g00130.t01	Wine grape	cytosol	27.76	37.39

Protein Annotations

KEGG:00030+5.1.3.1	KEGG:00040+5.1.3.1	KEGG:00710+5.1.3.1	MapMan:1.2.10	EntrezGene:100267206	wikigene:100267206
Gene3D:3.20.20.70	EMBL:AM425046	InterPro:Aldolase_TIM	ProteinID:CAN66664	ProteinID:CAN66664.1	ProteinID:CCB43074
ProteinID:CCB43074.1	UniProt:F6GT65	EMBL:FN594950	GO:GO:0003674	GO:GO:0003824	GO:GO:0004750
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005975	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009052	GO:GO:0009056
GO:GO:0009987	GO:GO:0016857	GO:GO:0019323	GO:GO:0044262	GO:GO:0046872	InterPro:IPR013785
EntrezGene:LOC100267206	wikigene:LOC100267206	PFAM:PF00834	ScanProsite:PS01085	ScanProsite:PS01086	PANTHER:PTHR11749
PANTHER:PTHR11749:SF4	InterPro:Ribul_P_3_epim-like	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	TIGRFAMs:TIGR01163	UniParc:UPI00021099F0
ArrayExpress:VIT_17s0000g06450	EnsemblPlantsGene:VIT_17s0000g06450	EnsemblPlants:VIT_17s0000g06450.t01	unigene:Vvi.7289	RefSeq:XP_002284772	RefSeq:XP_002284772.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr17:+:7037862..7044980

Molecular Weight (calculated)

32163.8 Da

IEP (calculated)

6.363

GRAVY (calculated)

0.093

Length

299 amino acids

Sequence
(BLAST)

001: MATASLGSST LQSQINGFGV NKLQRSSLFQ PTSFTFSRRK FSSTVKASAR VDKFSKSDII VSPSILSANF AKLGEQVKAV ELAGCDWIHV DVMDGRFVPN
101: ITIGPLIVGA LRPVTDLPLD VHLMIVEPEQ RVPDFIKAGA DIVSVHCEQS STIHLHRTIN QIKSLGAKAG VVLNPATPLS TIEYVLDVVD LVLIMSVNPG
201: FGGQSFIESQ VKKISDLRRI CAEKGVNPWI EVDGGVGPAN AYKVIEAGAN ALVAGSAVFG AKDYAEGMDS VNLNESERDE LKPARGLLQL QYESQLQMI

Best Arabidopsis Sequence Match ( AT5G61410.2 )
(BLAST)

001: MSTSAASLCC SSTQVNGFGL RPERSLLYQP TSFSFSRRRT HGIVKASSRV DRFSKSDIIV SPSILSANFA KLGEQVKAVE LAGCDWIHVD VMDGRFVPNI
101: TIGPLVVDAL RPVTDLPLDV HLMIVEPEQR VPDFIKAGAD IVSVHCEQQS TIHLHRTVNQ IKSLGAKAGV VLNPGTPLSA IEYVLDMVDL VLIMSVNPGF
201: GGQSFIESQV KKISDLRKMC AEKGVNPWIE VDGGVTPANA YKVIEAGANA LVAGSAVFGA KDYAEAIKGI KASKRPAAVA V

Arabidopsis Description

RPERPE [Source:UniProtKB/TrEMBL;Acc:A0A178UPG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.