Factsheet for Bra012962.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009244.1-P
Bra012962.1-P
Bra012963.1-P
Bra027469.1-P
Bra029310.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61410.1	Bra027469.1-P	AT5G42980.1	15352244
AT5G61410.1	Bra009244.1-P	AT5G61410.1	21798944
AT5G61410.1	Bra012962.1-P	AT5G61410.1	21798944
AT5G61410.1	Bra012963.1-P	AT5G61410.1	21798944
AT5G61410.1	Bra029310.1-P	AT5G61410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029310.1-P	Field mustard	cytosol	24.68	74.03
Bra012963.1-P	Field mustard	plastid	66.23	54.26
CDY64139	Canola	plastid	65.8	53.71
Bra009244.1-P	Field mustard	plastid	63.2	53.09
AT5G61410.1	Thale cress	plastid	61.9	50.89
TraesCS4D01G283800.1	Wheat	golgi, plastid	59.31	50.18
TraesCS4B01G285000.1	Wheat	plastid	59.31	50.18
TraesCS4A01G019100.1	Wheat	plastid	59.31	50.18
KRH03501	Soybean	plastid	60.61	50.0
Solyc03g115820.2.1	Tomato	plastid	60.61	49.65
KRH56893	Soybean	plastid	60.17	49.64
EER92786	Sorghum	extracellular, plastid	58.87	49.45
Os03t0169100-01	Rice	plastid	58.44	49.27
Zm00001d027841_P002	Maize	plastid	58.44	49.27
PGSC0003DMT400050256	Potato	plastid	60.17	48.77
GSMUA_Achr6P10790_001	Banana	plastid	59.31	48.58
GSMUA_Achr2P21940_001	Banana	plastid	59.31	48.41
VIT_17s0000g06450.t01	Wine grape	plastid	59.74	46.15
Zm00001d048324_P001	Maize	plastid	57.58	42.77
HORVU4Hr1G074810.3	Barley	cytosol, plastid	59.74	42.59
Bra027631.1-P	Field mustard	cytosol	24.24	19.93

Protein Annotations

KEGG:00030+5.1.3.1	KEGG:00040+5.1.3.1	KEGG:00710+5.1.3.1	Gene3D:3.20.20.70	MapMan:50.5.1	InterPro:Aldolase_TIM
EnsemblPlantsGene:Bra012962	EnsemblPlants:Bra012962.1	EnsemblPlants:Bra012962.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016857	InterPro:IPR013785	UniProt:M4D902	PFAM:PF00834
ScanProsite:PS01085	PANTHER:PTHR11749	PANTHER:PTHR11749:SF4	InterPro:Ribul_P_3_epim-like	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366
UniParc:UPI0002540571	SEG:seg	:	:	:	:

Description

AT5G61410 (E=2e-076) RPE, EMB2728 | RPE; catalytic/ ribulose-phosphate 3-epimerase

Coordinates

chrA03:-:21291526..21293441

Molecular Weight (calculated)

23896.6 Da

IEP (calculated)

9.175

GRAVY (calculated)

-0.069

Length

231 amino acids

Sequence
(BLAST)

001: MSGKSGNGGG GKSGGSGGGK SSGGSGGGGG GGYMVAPGSK GGAYISRGGF ESNPQAYFGN LHGSGQSKKR RGHGVVKATA RVDKFSKSDI IVSPSILSAN
101: FAKLGEQVKA VECAGCDWIH VDVMDGRFVP NITIGPLVVD ALRPVTDLPL DVHLMIVEPD LRVPDFIKAG ADIVSVHCEQ SSTIHLHRTV NQIKSLGAKA
201: GVVLNPGTPL SAIEYVLEGE FFFFLSRHLH Q

Best Arabidopsis Sequence Match ( AT5G61410.2 )
(BLAST)

001: MSTSAASLCC SSTQVNGFGL RPERSLLYQP TSFSFSRRRT HGIVKASSRV DRFSKSDIIV SPSILSANFA KLGEQVKAVE LAGCDWIHVD VMDGRFVPNI
101: TIGPLVVDAL RPVTDLPLDV HLMIVEPEQR VPDFIKAGAD IVSVHCEQQS TIHLHRTVNQ IKSLGAKAGV VLNPGTPLSA IEYVLDMVDL VLIMSVNPGF
201: GGQSFIESQV KKISDLRKMC AEKGVNPWIE VDGGVTPANA YKVIEAGANA LVAGSAVFGA KDYAEAIKGI KASKRPAAVA V

Arabidopsis Description

RPERPE [Source:UniProtKB/TrEMBL;Acc:A0A178UPG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.