Factsheet for Bra029310.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009244.1-P
Bra012962.1-P
Bra012963.1-P
Bra027469.1-P
Bra029310.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61410.1	Bra027469.1-P	AT5G42980.1	15352244
AT5G61410.1	Bra009244.1-P	AT5G61410.1	21798944
AT5G61410.1	Bra012962.1-P	AT5G61410.1	21798944
AT5G61410.1	Bra012963.1-P	AT5G61410.1	21798944
AT5G61410.1	Bra029310.1-P	AT5G61410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71665	Canola	plastid	96.1	30.96
Bra009244.1-P	Field mustard	plastid	88.31	24.73
Bra012962.1-P	Field mustard	plastid	74.03	24.68
Os03t0169100-01	Rice	plastid	87.01	24.45
Bra012963.1-P	Field mustard	plastid	88.31	24.11
Solyc03g115820.2.1	Tomato	plastid	88.31	24.11
Zm00001d027841_P002	Maize	plastid	85.71	24.09
KRH03501	Soybean	plastid	87.01	23.93
PGSC0003DMT400050256	Potato	plastid	88.31	23.86
AT5G61410.1	Thale cress	plastid	87.01	23.84
EER92786	Sorghum	extracellular, plastid	84.42	23.64
KRH56893	Soybean	plastid	85.71	23.57
TraesCS4A01G019100.1	Wheat	plastid	81.82	23.08
TraesCS4B01G285000.1	Wheat	plastid	81.82	23.08
TraesCS4D01G283800.1	Wheat	golgi, plastid	81.82	23.08
GSMUA_Achr6P10790_001	Banana	plastid	84.42	23.05
GSMUA_Achr2P21940_001	Banana	plastid	83.12	22.61
VIT_17s0000g06450.t01	Wine grape	plastid	84.42	21.74
Zm00001d048324_P001	Maize	plastid	85.71	21.22
HORVU4Hr1G074810.3	Barley	cytosol, plastid	68.83	16.36
Bra027631.1-P	Field mustard	cytosol	29.87	8.19

Protein Annotations

KEGG:00030+5.1.3.1	KEGG:00040+5.1.3.1	KEGG:00710+5.1.3.1	Gene3D:3.20.20.70	MapMan:35.1	InterPro:Aldolase_TIM
EnsemblPlantsGene:Bra029310	EnsemblPlants:Bra029310.1	EnsemblPlants:Bra029310.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016857	InterPro:IPR013785	UniProt:M4EKJ3	PFAM:PF00834
PANTHER:PTHR11749	PANTHER:PTHR11749:SF4	InterPro:Ribul_P_3_epim-like	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	UniParc:UPI00025459BB

Description

AT5G61410 (E=5e-028) RPE, EMB2728 | RPE; catalytic/ ribulose-phosphate 3-epimerase

Coordinates

chrA02:+:25953942..25954262

Molecular Weight (calculated)

8308.0 Da

IEP (calculated)

6.225

GRAVY (calculated)

-0.030

Length

77 amino acids

Sequence
(BLAST)

1: MIVEPDQRVP DFIKAGADIV SVHCEQSSTI HLHRSVNQIK SLGANAGVVL NPETPLNAIE YILDGGVTPK NAYKVNL

Best Arabidopsis Sequence Match ( AT5G61410.2 )
(BLAST)

001: MSTSAASLCC SSTQVNGFGL RPERSLLYQP TSFSFSRRRT HGIVKASSRV DRFSKSDIIV SPSILSANFA KLGEQVKAVE LAGCDWIHVD VMDGRFVPNI
101: TIGPLVVDAL RPVTDLPLDV HLMIVEPEQR VPDFIKAGAD IVSVHCEQQS TIHLHRTVNQ IKSLGAKAGV VLNPGTPLSA IEYVLDMVDL VLIMSVNPGF
201: GGQSFIESQV KKISDLRKMC AEKGVNPWIE VDGGVTPANA YKVIEAGANA LVAGSAVFGA KDYAEAIKGI KASKRPAAVA V

Arabidopsis Description

RPERPE [Source:UniProtKB/TrEMBL;Acc:A0A178UPG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.