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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, extracellular

Predictor Summary:
  • cytosol 2
  • plastid 5
  • mitochondrion 1
  • extracellular 2
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, plastid
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:cytosol
EpiLoc:plastid
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
Predotar:plastid
PProwler:mitochondrion
TargetP:secretory
WoLF PSORT:extracellular
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
EER92786
OQU78269

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G61410.1 OQU78269 AT5G42980.1 15352244
AT5G61410.1 EER92786 AT5G61410.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d027841_P002 Maize plastid 86.55 86.86
Os03t0169100-01 Rice plastid 85.45 85.77
Bra029310.1-P Field mustard cytosol 23.64 84.42
TraesCS4D01G283800.1 Wheat golgi, plastid 79.64 80.22
TraesCS4B01G285000.1 Wheat plastid 79.64 80.22
TraesCS4A01G019100.1 Wheat plastid 79.64 80.22
Bra009244.1-P Field mustard plastid 79.27 79.27
CDX70050 Canola plastid 79.27 79.27
CDX98974 Canola plastid 79.27 79.27
KRH56893 Soybean plastid 79.64 78.21
GSMUA_Achr6P10790_001 Banana plastid 80.0 78.01
KRH03501 Soybean plastid 78.91 77.5
Solyc03g115820.2.1 Tomato plastid 79.27 77.31
AT5G61410.1 Thale cress plastid 78.91 77.22
CDY02150 Canola plastid 78.91 76.95
Bra012963.1-P Field mustard plastid 78.91 76.95
CDY64139 Canola plastid 78.91 76.68
PGSC0003DMT400050256 Potato plastid 78.18 75.44
GSMUA_Achr2P21940_001 Banana plastid 77.09 74.91
Zm00001d048324_P001 Maize plastid 81.82 72.35
VIT_17s0000g06450.t01 Wine grape plastid 77.09 70.9
CDY71665 Canola plastid 55.64 64.02
Bra012962.1-P Field mustard plastid 49.45 58.87
HORVU4Hr1G074810.3 Barley cytosol, plastid 61.82 52.47
EER99152 Sorghum cytosol 32.73 40.0
Protein Annotations
KEGG:00030+5.1.3.1KEGG:00040+5.1.3.1KEGG:00710+5.1.3.1MapMan:1.2.10Gene3D:3.20.20.70InterPro:Aldolase_TIM
UniProt:C5WWR4EnsemblPlants:EER92786ProteinID:EER92786ProteinID:EER92786.2GO:GO:0003674GO:GO:0003824
GO:GO:0004311GO:GO:0004750GO:GO:0005488GO:GO:0005575GO:GO:0005576GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0005975GO:GO:0006091GO:GO:0006098
GO:GO:0006139GO:GO:0006783GO:GO:0006950GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009409GO:GO:0009536GO:GO:0009570GO:GO:0009579GO:GO:0009605GO:GO:0009607
GO:GO:0009624GO:GO:0009628GO:GO:0009941GO:GO:0009987GO:GO:0010319GO:GO:0016740
GO:GO:0016853GO:GO:0016857GO:GO:0045333GO:GO:0046872GO:GO:0048046InterPro:IPR013785
PFAM:PF00834PIRSF:PIRSF001461ScanProsite:PS01085ScanProsite:PS01086PANTHER:PTHR11749PANTHER:PTHR11749:SF4
MetaCyc:PWY-1861MetaCyc:PWY-5723InterPro:Ribul_P_3_epimInterPro:Ribul_P_3_epim-likeInterPro:RibuloseP-bd_barrelEnsemblPlantsGene:SORBI_3001G491000
SUPFAM:SSF51366unigene:Sbi.7568TIGRFAMs:TIGR01163UniParc:UPI00022070AFSEG:seg:
Description
hypothetical protein
Coordinates
chr1:-:76087538..76091277
Molecular Weight (calculated)
28718.0 Da
IEP (calculated)
6.498
GRAVY (calculated)
0.336
Length
275 amino acids
Sequence
(BLAST)
001: MPPCGAAANC LVTCCGIAGA QHGLQLPCLS VGGKGFQARA SARVDKFSKS DIIVSPSILS ANFAKLGDQV KAVEVAGCDW IHVDVMDGRF VPNITIGPLV
101: VDALRPVTDL PLDVHLMIVE PEQRVPDFIK AGADIVSVHC EQTSTIHLHR TVNQIKSLGA KAGVVLNPAT PLAAIDYVLD VVDLVLIMSV NPGFGGQSFI
201: ESQVKKIAEL RRLCAEKGVN PWIEVDGGVG PTNAYKVIEA GANAIVAGSA VFGAPDYAEA IKGIKTSQRP VAVPA
Best Arabidopsis Sequence Match ( AT5G61410.2 )
(BLAST)
001: MSTSAASLCC SSTQVNGFGL RPERSLLYQP TSFSFSRRRT HGIVKASSRV DRFSKSDIIV SPSILSANFA KLGEQVKAVE LAGCDWIHVD VMDGRFVPNI
101: TIGPLVVDAL RPVTDLPLDV HLMIVEPEQR VPDFIKAGAD IVSVHCEQQS TIHLHRTVNQ IKSLGAKAGV VLNPGTPLSA IEYVLDMVDL VLIMSVNPGF
201: GGQSFIESQV KKISDLRKMC AEKGVNPWIE VDGGVTPANA YKVIEAGANA LVAGSAVFGA KDYAEAIKGI KASKRPAAVA V
Arabidopsis Description
RPERPE [Source:UniProtKB/TrEMBL;Acc:A0A178UPG9]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.