Factsheet for Bra012963.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009244.1-P
Bra012962.1-P
Bra012963.1-P
Bra027469.1-P
Bra029310.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61410.1	Bra027469.1-P	AT5G42980.1	15352244
AT5G61410.1	Bra009244.1-P	AT5G61410.1	21798944
AT5G61410.1	Bra012962.1-P	AT5G61410.1	21798944
AT5G61410.1	Bra012963.1-P	AT5G61410.1	21798944
AT5G61410.1	Bra029310.1-P	AT5G61410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02150	Canola	plastid	99.65	99.65
AT5G61410.1	Thale cress	plastid	89.36	89.68
Bra009244.1-P	Field mustard	plastid	86.52	88.73
Bra029310.1-P	Field mustard	cytosol	24.11	88.31
TraesCS4D01G283800.1	Wheat	golgi, plastid	80.85	83.52
TraesCS4B01G285000.1	Wheat	plastid	80.85	83.52
TraesCS4A01G019100.1	Wheat	plastid	80.85	83.52
KRH56893	Soybean	plastid	82.27	82.86
KRH03501	Soybean	plastid	81.21	81.79
Solyc03g115820.2.1	Tomato	plastid	81.56	81.56
Os03t0169100-01	Rice	plastid	78.37	80.66
Zm00001d027841_P002	Maize	plastid	78.37	80.66
PGSC0003DMT400050256	Potato	plastid	80.5	79.65
EER92786	Sorghum	extracellular, plastid	76.95	78.91
GSMUA_Achr6P10790_001	Banana	plastid	78.72	78.72
GSMUA_Achr2P21940_001	Banana	plastid	75.18	74.91
VIT_17s0000g06450.t01	Wine grape	plastid	78.37	73.91
Zm00001d048324_P001	Maize	plastid	74.82	67.85
Bra012962.1-P	Field mustard	plastid	54.26	66.23
HORVU4Hr1G074810.3	Barley	cytosol, plastid	62.41	54.32
Bra027631.1-P	Field mustard	cytosol	34.04	34.16

Protein Annotations

KEGG:00030+5.1.3.1	KEGG:00040+5.1.3.1	KEGG:00710+5.1.3.1	MapMan:1.2.10	Gene3D:3.20.20.70	InterPro:Aldolase_TIM
EnsemblPlantsGene:Bra012963	EnsemblPlants:Bra012963.1	EnsemblPlants:Bra012963.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016857	InterPro:IPR013785	UniProt:M4D903	PFAM:PF00834
ScanProsite:PS01085	ScanProsite:PS01086	PANTHER:PTHR11749	PANTHER:PTHR11749:SF4	InterPro:Ribul_P_3_epim-like	InterPro:RibuloseP-bd_barrel
SUPFAM:SSF51366	TIGRFAMs:TIGR01163	UniParc:UPI0002540570	SEG:seg	:	:

Description

AT5G61410 (E=1e-133) RPE, EMB2728 | RPE; catalytic/ ribulose-phosphate 3-epimerase

Coordinates

chrA03:-:21290903..21292589

Molecular Weight (calculated)

30185.5 Da

IEP (calculated)

7.467

GRAVY (calculated)

0.133

Length

282 amino acids

Sequence
(BLAST)

001: MSTSLSTSLC CSSTQVNGFA LGPQRSLLYQ PSSFSFSRRR GHGVVKATAR VDKFSKSDII VSPSILSANF AKLGEQVKAV ECAGCDWIHV DVMDGRFVPN
101: ITIGPLVVDA LRPVTDLPLD VHLMIVEPDL RVPDFIKAGA DIVSVHCEQS STIHLHRTVN QIKSLGAKAG VVLNPGTPLS AIEYVLEEVD LVLIMSVNPG
201: FGGQSFIESQ VKKISDLRRM CVEKGVNPWI EVDGGVTPKN AYKVIEAGAN ALVAGSAVFG AKDYEEAIKG IKNSKRPEAV AV

Best Arabidopsis Sequence Match ( AT5G61410.2 )
(BLAST)

001: MSTSAASLCC SSTQVNGFGL RPERSLLYQP TSFSFSRRRT HGIVKASSRV DRFSKSDIIV SPSILSANFA KLGEQVKAVE LAGCDWIHVD VMDGRFVPNI
101: TIGPLVVDAL RPVTDLPLDV HLMIVEPEQR VPDFIKAGAD IVSVHCEQQS TIHLHRTVNQ IKSLGAKAGV VLNPGTPLSA IEYVLDMVDL VLIMSVNPGF
201: GGQSFIESQV KKISDLRKMC AEKGVNPWIE VDGGVTPANA YKVIEAGANA LVAGSAVFGA KDYAEAIKGI KASKRPAAVA V

Arabidopsis Description

RPERPE [Source:UniProtKB/TrEMBL;Acc:A0A178UPG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.