Factsheet for Solyc03g115820.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g115820.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61410.1	Solyc03g115820.2.1	AT5G61410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400050256	Potato	plastid	97.52	96.49
Bra029310.1-P	Field mustard	cytosol	24.11	88.31
KRH03501	Soybean	plastid	85.82	86.43
KRH56893	Soybean	plastid	84.4	85.0
Bra009244.1-P	Field mustard	plastid	80.5	82.55
CDX70050	Canola	plastid	80.5	82.55
CDX98974	Canola	plastid	80.14	82.18
Os03t0169100-01	Rice	plastid	79.79	82.12
AT5G61410.1	Thale cress	plastid	81.56	81.85
Zm00001d027841_P002	Maize	plastid	79.43	81.75
CDY02150	Canola	plastid	81.56	81.56
Bra012963.1-P	Field mustard	plastid	81.56	81.56
TraesCS4D01G283800.1	Wheat	golgi, plastid	78.72	81.32
TraesCS4B01G285000.1	Wheat	plastid	78.72	81.32
TraesCS4A01G019100.1	Wheat	plastid	78.72	81.32
CDY64139	Canola	plastid	81.56	81.27
EER92786	Sorghum	extracellular, plastid	77.31	79.27
GSMUA_Achr6P10790_001	Banana	plastid	78.72	78.72
VIT_17s0000g06450.t01	Wine grape	plastid	80.85	76.25
GSMUA_Achr2P21940_001	Banana	plastid	75.53	75.27
CDY71665	Canola	plastid	58.51	69.04
Zm00001d048324_P001	Maize	plastid	75.53	68.49
Bra012962.1-P	Field mustard	plastid	49.65	60.61
HORVU4Hr1G074810.3	Barley	cytosol, plastid	60.28	52.47
Solyc05g007260.2.1	Tomato	cytosol, extracellular	33.33	43.52

Protein Annotations

KEGG:00030+5.1.3.1	KEGG:00040+5.1.3.1	KEGG:00710+5.1.3.1	MapMan:1.2.10	Gene3D:3.20.20.70	InterPro:Aldolase_TIM
GO:GO:0003674	GO:GO:0003824	GO:GO:0004750	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005975	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009052	GO:GO:0009056	GO:GO:0009987	GO:GO:0016857	GO:GO:0019323
GO:GO:0044262	GO:GO:0046872	InterPro:IPR013785	UniProt:K4BL84	PFAM:PF00834	ScanProsite:PS01085
ScanProsite:PS01086	PANTHER:PTHR11749	PANTHER:PTHR11749:SF4	InterPro:Ribul_P_3_epim-like	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366
EnsemblPlantsGene:Solyc03g115820.2	EnsemblPlants:Solyc03g115820.2.1	TIGRFAMs:TIGR01163	UniParc:UPI0002768B48	SEG:seg	:

Description

No Description!

Coordinates

chr3:-:65410025..65416452

Molecular Weight (calculated)

29848.0 Da

IEP (calculated)

8.085

GRAVY (calculated)

0.155

Length

282 amino acids

Sequence
(BLAST)

001: MATASSLGSS TLLQSQISGF GGSQKISFSN PNSLTFTRRR IQTVVTASSR VDKFSKSDII VSPSILSANF SKLGEQVKAV EQAGCDWIHV DVMDGRFVPN
101: ITIGPLVVDS LRPITDLPLD VHLMIVEPDQ RVPDFIKAGA DIVSVHCEQS STIHLHRTIN QIKSLGAKAG VVLNPGTPLT AIEYVLDAVD LVLIMSVNPG
201: FGGQSFIESQ VKKISDLRKI CAEKGVNPWI EVDGGVGPKN AYKVIEAGAN ALVAGSAVFG APDYAEAIKG IKTSKRPAAV AV

Best Arabidopsis Sequence Match ( AT5G61410.2 )
(BLAST)

001: MSTSAASLCC SSTQVNGFGL RPERSLLYQP TSFSFSRRRT HGIVKASSRV DRFSKSDIIV SPSILSANFA KLGEQVKAVE LAGCDWIHVD VMDGRFVPNI
101: TIGPLVVDAL RPVTDLPLDV HLMIVEPEQR VPDFIKAGAD IVSVHCEQQS TIHLHRTVNQ IKSLGAKAGV VLNPGTPLSA IEYVLDMVDL VLIMSVNPGF
201: GGQSFIESQV KKISDLRKMC AEKGVNPWIE VDGGVTPANA YKVIEAGANA LVAGSAVFGA KDYAEAIKGI KASKRPAAVA V

Arabidopsis Description

RPERPE [Source:UniProtKB/TrEMBL;Acc:A0A178UPG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.