Factsheet for Zm00001d052165_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
plastid: 22065420
extracellular: 22192489
plastid: 23198870

msms PMID: 22192489 doi

K Witzel, M Shahzad, A Matros, HP Mock, KH Mühling

Institute of Plant Nutrition and Soil Science, Christian Albrechts University, Hermann-Rodewald-Strasse 2, 24118 Kiel, Germany. khmuehling@plantnutrition.uni-kiel.de.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d038652_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G15620.1	Zm00001d038652_P003	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052164_P002	Maize	plastid	100.0	100.0
EES07578	Sorghum	plastid	90.79	91.4
Zm00001d018161_P001	Maize	plastid	89.78	88.45
Os02t0765900-00	Rice	cytosol	39.87	85.61
TraesCS6D01G313100.1	Wheat	plastid	82.58	82.58
TraesCS6A01G333900.1	Wheat	plastid	82.08	82.08
Os01t0357100-02	Rice	plastid	82.58	78.63
TraesCS6B01G364600.1	Wheat	plastid	82.75	78.41
CDY69481	Canola	mitochondrion	59.3	76.96
Bra039844.1-P	Field mustard	cytosol	64.82	76.33
HORVU6Hr1G080750.4	Barley	plastid	82.75	74.62
CDY37232	Canola	plastid	71.52	73.12
GSMUA_Achr9P15320_001	Banana	plastid	74.87	72.8
PGSC0003DMT400021310	Potato	plastid	71.02	72.6
AT2G15620.1	Thale cress	plastid	70.85	72.18
CDY36642	Canola	plastid	70.69	72.01
CDX71230	Canola	plastid	70.52	71.84
Solyc10g050890.1.1	Tomato	plastid	70.18	71.75
CDY72359	Canola	plastid	49.25	71.53
PGSC0003DMT400066399	Potato	cytosol	69.51	70.7
Solyc01g108630.2.1	Tomato	plastid	69.51	70.7
Bra015227.1-P	Field mustard	plastid	69.68	70.63
KRH71138	Soybean	plastid, vacuole	70.85	69.92
VIT_03s0063g00370.t01	Wine grape	plastid	69.68	69.92
KRH50280	Soybean	plastid	71.52	69.77
Zm00001d038625_P001	Maize	plastid	21.94	20.63

Protein Annotations

KEGG:00920+1.8.1.2	MapMan:25.1.4.2	Gene3D:3.30.413.10	Gene3D:3.90.480.20	EntrezGene:542264	ProteinID:AQK56384.1
ProteinID:AQK56386.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0020037	GO:GO:0051536	GO:GO:0055114	UniProt:K7U9U9	InterPro:NO2/SO3_Rdtase_4Fe4S_dom
InterPro:NO2/SO3_Rdtase_FeS/sirohaem_BS	InterPro:NiRdtase/SiRdtase_haem-b_fer	InterPro:Nit/Sulf_reduc_fer_like_dom_sf	PFAM:PF01077	PFAM:PF03460	PRINTS:PR00397
ScanProsite:PS00365	PANTHER:PTHR32439	PANTHER:PTHR32439:SF0	SUPFAM:SSF55124	SUPFAM:SSF56014	UniParc:UPI000160B769
EnsemblPlantsGene:Zm00001d052165	EnsemblPlants:Zm00001d052165_P001	EnsemblPlants:Zm00001d052165_T001	SEG:seg	:	:

Description

nitrite reductase2 nitrite reductase2

Coordinates

chr4:+:181552730..181556339

Molecular Weight (calculated)

66174.6 Da

IEP (calculated)

6.897

GRAVY (calculated)

-0.314

Length

597 amino acids

Sequence
(BLAST)

001: MASSASLQRF LLPSSHAAAT AASPSSRLRR TGRARAAVSV PPPAAAGEQV PTERLEPRVE ERAGGYWVLK EKYRAGLNPQ EKVKLEKEPM ALFMEGGIQD
101: LARVPMEQID AAKLTKDDVD VRLKWLGLFH RRKHQYGRFM MRLKLPNGVT TSEQTRYLAS VIEAYGADGC ADVTTRQNWQ IRGVTLPDVP AILDGLRAVG
201: LTSLQSGMDN VRNPVGNPLA GVDPHEIVDT RPYTNLLSSY VTNNSQGNPT ITNLPRKWNV CVIGSHDLYE HPHINDLAYM PAVKDGEFGF NLLVGGFISP
301: KRWAEALPLD AWVAGDDVVP VCKAILEAYR DLGSRGNRQK TRMMWLIDEL GMEVFRSEVE KRMPNGVLER AAPEDLVDKR WERRDYLGVH PQKQEGLSYV
401: GLHVPVGRLQ AADMFELARL ADEYGTGELR LTVEQNIVLP NVSNERLDAL LAEPLLQEQR LSPRPSMLLR GLVACTGNQF CGQAIIETKA RALQVAREVE
501: KRVAVPRPVR MHWTGCPNSC GQVQVADIGF MGCLTKDSDG KIVEAADIFV GGRVGSDSHL ADVYRKSVPC KDLVPIVADL LVERFGAVPR EREEDEE

Best Arabidopsis Sequence Match ( AT2G15620.1 )
(BLAST)

001: MTSFSLTFTS PLLPSSSTKP KRSVLVAAAQ TTAPAESTAS VDADRLEPRV ELKDGFFILK EKFRKGINPQ EKVKIEREPM KLFMENGIEE LAKKSMEELD
101: SEKSSKDDID VRLKWLGLFH RRKHQYGKFM MRLKLPNGVT TSAQTRYLAS VIRKYGEDGC ADVTTRQNWQ IRGVVLPDVP EILKGLASVG LTSLQSGMDN
201: VRNPVGNPIA GIDPEEIVDT RPYTNLLSQF ITANSQGNPD FTNLPRKWNV CVVGTHDLYE HPHINDLAYM PANKDGRFGF NLLVGGFFSP KRCEEAIPLD
301: AWVPADDVLP LCKAVLEAYR DLGTRGNRQK TRMMWLIDEL GVEGFRTEVE KRMPNGKLER GSSEDLVNKQ WERRDYFGVN PQKQEGLSFV GLHVPVGRLQ
401: ADDMDELARL ADTYGSGELR LTVEQNIIIP NVETSKTEAL LQEPFLKNRF SPEPSILMKG LVACTGSQFC GQAIIETKLR ALKVTEEVER LVSVPRPIRM
501: HWTGCPNTCG QVQVADIGFM GCLTRGEEGK PVEGADVYVG GRIGSDSHIG EIYKKGVRVT ELVPLVAEIL IKEFGAVPRE REENED

Arabidopsis Description

NIR1Ferredoxin--nitrite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q39161]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.