Factsheet for Zm00001d018161_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d038652_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G15620.1	Zm00001d038652_P003	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07578	Sorghum	plastid	88.28	90.22
Zm00001d052165_P001	Maize	plastid	88.45	89.78
Zm00001d052164_P002	Maize	plastid	88.45	89.78
Os02t0765900-00	Rice	cytosol	39.27	85.61
TraesCS6D01G313100.1	Wheat	plastid	80.69	81.91
TraesCS6A01G333900.1	Wheat	plastid	80.36	81.57
TraesCS6B01G364600.1	Wheat	plastid	81.02	77.94
Os01t0357100-02	Rice	plastid	79.54	76.87
CDY69481	Canola	mitochondrion	58.09	76.52
Bra039844.1-P	Field mustard	cytosol	63.53	75.94
HORVU6Hr1G080750.4	Barley	plastid	81.02	74.17
GSMUA_Achr9P15320_001	Banana	plastid	73.43	72.48
PGSC0003DMT400021310	Potato	plastid	69.47	72.09
CDY37232	Canola	plastid	69.47	72.09
CDY72359	Canola	plastid	48.51	71.53
CDX71230	Canola	plastid	68.98	71.33
CDY36642	Canola	plastid	68.98	71.33
PGSC0003DMT400066399	Potato	cytosol	68.98	71.21
KRH71138	Soybean	plastid, vacuole	70.96	71.07
Solyc01g108630.2.1	Tomato	plastid	68.81	71.04
Solyc10g050890.1.1	Tomato	plastid	68.32	70.89
AT2G15620.1	Thale cress	plastid	68.48	70.82
KRH50280	Soybean	plastid	70.63	69.93
VIT_03s0063g00370.t01	Wine grape	plastid	68.65	69.92
Bra015227.1-P	Field mustard	plastid	67.49	69.44
Zm00001d038625_P001	Maize	plastid	21.29	20.32

Protein Annotations

KEGG:00920+1.8.1.2	MapMan:25.1.4.2	Gene3D:3.30.413.10	Gene3D:3.90.480.20	UniProt:A0A1D6HL75	ProteinID:AQK75176.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0020037	GO:GO:0051536	GO:GO:0055114	InterPro:NO2/SO3_Rdtase_4Fe4S_dom	InterPro:NO2/SO3_Rdtase_FeS/sirohaem_BS	InterPro:NiRdtase/SiRdtase_haem-b_fer
InterPro:Nit/Sulf_reduc_fer_like_dom_sf	PFAM:PF01077	PFAM:PF03460	PRINTS:PR00397	ScanProsite:PS00365	PANTHER:PTHR32439
PANTHER:PTHR32439:SF0	SUPFAM:SSF55124	SUPFAM:SSF56014	UniParc:UPI0008452DE2	EnsemblPlantsGene:Zm00001d018161	EnsemblPlants:Zm00001d018161_P001
EnsemblPlants:Zm00001d018161_T001	SEG:seg	:	:	:	:

Description

Ferredoxin--nitrite reductase chloroplastic

Coordinates

chr5:-:215727084..215730071

Molecular Weight (calculated)

67422.1 Da

IEP (calculated)

8.597

GRAVY (calculated)

-0.350

Length

606 amino acids

Sequence
(BLAST)

001: MASTASLQRF LPASPHASSR RRAGRARAAV SIPSSSPPAT RDNEVPAERL EPRVEAREGG YWSLKERYRT GLNPHEKVKL EKEPMALFMD GGVRDLAKIP
101: MEVIDAAKLT KDDVDVRLKW LGLFHRRKHQ YGRFMMRLKL PNGVTTSEQT RYLASVIEAY GADGCADVTT RQNWQIRGVT LPDVPAILDG LRAVGLTSLQ
201: SGMDNVRNPV GNPLAGVDPH EIVDTRPYTN LLSSYITSNS QGNPAITNLV RNLTVTRPGA NRPRKWNVCV IGSHDLYEHP HINDLAYMPA VKDGKFGFNL
301: LVGGFISPKR WAEALPLDAW VAGDDVVPAC KAILEAYRDL GFRGNRQKTR MMWLIDELGM EVFRSEVEKR MPNGVLERAA AEDLVDKKWE RRDYLGVHPQ
401: KQEGLSYVGL HVPVGRLQAA DMFELARLAD EYGTGELRLT VEQNVVLPNV SNRRLDALLA EPLLQRQRLS PQPSLLLRGL VACTGNQFCG QAIIETKARA
501: LQVAREVEKR VAVPRPVRMH WTGCPNSCAQ VQVADIGFMG CLTKDRDGKV VEAADIFVGG RVGSDSHLAD VYRKSVPCKD LVPIVADLLV ERFGAVPRER
601: EEEDEE

Best Arabidopsis Sequence Match ( AT2G15620.1 )
(BLAST)

001: MTSFSLTFTS PLLPSSSTKP KRSVLVAAAQ TTAPAESTAS VDADRLEPRV ELKDGFFILK EKFRKGINPQ EKVKIEREPM KLFMENGIEE LAKKSMEELD
101: SEKSSKDDID VRLKWLGLFH RRKHQYGKFM MRLKLPNGVT TSAQTRYLAS VIRKYGEDGC ADVTTRQNWQ IRGVVLPDVP EILKGLASVG LTSLQSGMDN
201: VRNPVGNPIA GIDPEEIVDT RPYTNLLSQF ITANSQGNPD FTNLPRKWNV CVVGTHDLYE HPHINDLAYM PANKDGRFGF NLLVGGFFSP KRCEEAIPLD
301: AWVPADDVLP LCKAVLEAYR DLGTRGNRQK TRMMWLIDEL GVEGFRTEVE KRMPNGKLER GSSEDLVNKQ WERRDYFGVN PQKQEGLSFV GLHVPVGRLQ
401: ADDMDELARL ADTYGSGELR LTVEQNIIIP NVETSKTEAL LQEPFLKNRF SPEPSILMKG LVACTGSQFC GQAIIETKLR ALKVTEEVER LVSVPRPIRM
501: HWTGCPNTCG QVQVADIGFM GCLTRGEEGK PVEGADVYVG GRIGSDSHIG EIYKKGVRVT ELVPLVAEIL IKEFGAVPRE REENED

Arabidopsis Description

NIR1Ferredoxin--nitrite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q39161]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.