Factsheet for Solyc10g050890.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021310	Potato	plastid	94.01	94.01
CDY69481	Canola	mitochondrion	64.38	81.74
Solyc01g108630.2.1	Tomato	plastid	81.68	81.26
Bra039844.1-P	Field mustard	cytosol	69.86	80.47
Os02t0765900-00	Rice	cytosol	37.33	78.42
AT2G15620.1	Thale cress	plastid	76.54	76.28
VIT_03s0063g00370.t01	Wine grape	plastid	77.57	76.13
CDY72359	Canola	plastid	53.25	75.67
CDX71230	Canola	plastid	75.86	75.6
CDY36642	Canola	plastid	75.86	75.6
Bra015227.1-P	Field mustard	plastid	76.2	75.55
CDY37232	Canola	plastid	75.17	75.17
KRH71138	Soybean	plastid, vacuole	75.86	73.22
KRH50280	Soybean	plastid	76.03	72.55
EES07578	Sorghum	plastid	72.6	71.5
Zm00001d052164_P002	Maize	plastid	71.75	70.18
Zm00001d052165_P001	Maize	plastid	71.75	70.18
GSMUA_Achr9P15320_001	Banana	plastid	73.12	69.54
TraesCS6A01G333900.1	Wheat	plastid	71.06	69.51
TraesCS6D01G313100.1	Wheat	plastid	71.06	69.51
Zm00001d018161_P001	Maize	plastid	70.89	68.32
TraesCS6B01G364600.1	Wheat	plastid	71.58	66.35
Os01t0357100-02	Rice	plastid	70.38	65.55
HORVU6Hr1G080750.4	Barley	plastid	71.23	62.84
Solyc11g065620.1.1	Tomato	plastid	23.63	19.97

Protein Annotations

KEGG:00920+1.8.1.2	MapMan:25.1.4.2	Gene3D:3.30.413.10	Gene3D:3.90.480.20	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0020037	GO:GO:0051536
GO:GO:0055114	UniProt:K4D0P3	InterPro:NO2/SO3_Rdtase_4Fe4S_dom	InterPro:NO2/SO3_Rdtase_FeS/sirohaem_BS	InterPro:NiRdtase/SiRdtase_haem-b_fer	InterPro:Nit/Sulf_reduc_fer_like_dom_sf
PFAM:PF01077	PFAM:PF03460	PRINTS:PR00397	ScanProsite:PS00365	PANTHER:PTHR32439	PANTHER:PTHR32439:SF0
SUPFAM:SSF55124	SUPFAM:SSF56014	EnsemblPlantsGene:Solyc10g050890.1	EnsemblPlants:Solyc10g050890.1.1	UniParc:UPI0001950D08	SEG:seg

Description

No Description!

Coordinates

chr10:-:51133785..51135993

Molecular Weight (calculated)

65752.1 Da

IEP (calculated)

6.938

GRAVY (calculated)

-0.393

Length

584 amino acids

Sequence
(BLAST)

001: MTSFSVKFSA TSLPNSNRFS KLHATPPQTV AVPSYGAAEI AAERLEPRVE QRDGYWVVKD KFRQGINPAE KAKIEKEPMK LFTENGIEDL AKISLEEIEK
101: SKLTKEDIDI RLKWLGLFHR RKHHYGRFMM RLKLPNGVTT SDQTRYLGSV IRKYGKDGCG DVTTRQNWQI RGVVLPDVPE ILKGLDEVGL TSLQSGMDNV
201: RNPVGNPLAG IDLHEIVDTR PYTNLLSQYV TANFRGNVDV TNLPRKWNVC VIGSHDLYEH PHINDLAYMP ATKDGRFGFN LLVGGFFSPK RCAEAIPLDA
301: WVPADDVVPV CKAILEAYRD LGTRGNRQKT RMMWLIDELG VEGFRAEVVK RMPQKKLDRE SSEDLVLKQW ERREYLGVHP QKQEGYSFVG LHIPVGRVQA
401: DDMDELARLA DEYGSGELRL TVEQNIIIPN IENSKIDALL NEPLLKNRFS PDPPILMRNL VACTGNQFCG QAIIETKARS MKITEEVQRL VSVTQPVRMH
501: WTGCPNTCGQ VQVADIGFMG CLTRKEGKTV EGADVFLGGR IGSDSHLGEV YKKSVPCEDL VPIIVDLLIN NFGAVPRERE ETEE

Best Arabidopsis Sequence Match ( AT2G15620.1 )
(BLAST)

001: MTSFSLTFTS PLLPSSSTKP KRSVLVAAAQ TTAPAESTAS VDADRLEPRV ELKDGFFILK EKFRKGINPQ EKVKIEREPM KLFMENGIEE LAKKSMEELD
101: SEKSSKDDID VRLKWLGLFH RRKHQYGKFM MRLKLPNGVT TSAQTRYLAS VIRKYGEDGC ADVTTRQNWQ IRGVVLPDVP EILKGLASVG LTSLQSGMDN
201: VRNPVGNPIA GIDPEEIVDT RPYTNLLSQF ITANSQGNPD FTNLPRKWNV CVVGTHDLYE HPHINDLAYM PANKDGRFGF NLLVGGFFSP KRCEEAIPLD
301: AWVPADDVLP LCKAVLEAYR DLGTRGNRQK TRMMWLIDEL GVEGFRTEVE KRMPNGKLER GSSEDLVNKQ WERRDYFGVN PQKQEGLSFV GLHVPVGRLQ
401: ADDMDELARL ADTYGSGELR LTVEQNIIIP NVETSKTEAL LQEPFLKNRF SPEPSILMKG LVACTGSQFC GQAIIETKLR ALKVTEEVER LVSVPRPIRM
501: HWTGCPNTCG QVQVADIGFM GCLTRGEEGK PVEGADVYVG GRIGSDSHIG EIYKKGVRVT ELVPLVAEIL IKEFGAVPRE REENED

Arabidopsis Description

NIR1Ferredoxin--nitrite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q39161]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.