Factsheet for Solyc11g065620.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
plastid: 22908117
nucleus: 25464976
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026666	Potato	extracellular	99.28	99.28
VIT_06s0004g02330.t01	Wine grape	plastid	79.45	79.91
KRH29037	Soybean	nucleus	79.02	79.48
KRH24061	Soybean	nucleus	78.0	78.34
GSMUA_Achr1P22900_001	Banana	plastid	76.99	77.33
HORVU7Hr1G034450.1	Barley	cytosol	36.03	76.85
CDY00681	Canola	plastid	71.49	76.83
CDY44868	Canola	plastid	71.49	76.59
AT5G04590.1	Thale cress	plastid	70.91	76.32
Bra001368.1-P	Field mustard	plastid	70.77	76.05
CDX73918	Canola	plastid	70.77	76.05
Bra009441.1-P	Field mustard	plastid	71.2	76.04
CDY66993	Canola	plastid	56.44	75.58
CDX70213	Canola	plastid	70.77	75.58
GSMUA_Achr6P25020_001	Banana	plastid	69.32	75.08
CDY41362	Canola	plastid	69.32	74.96
Bra034128.1-P	Field mustard	plastid	69.18	74.92
HORVU6Hr1G078400.1	Barley	cytosol	21.42	72.91
HORVU7Hr1G063980.1	Barley	cytosol	38.93	71.73
Zm00001d038625_P001	Maize	plastid	65.56	71.34
EES19776	Sorghum	plastid	65.41	70.96
TraesCS1B01G336300.1	Wheat	plastid	64.98	70.6
HORVU2Hr1G007660.2	Barley	cytosol	39.07	70.5
HORVU1Hr1G065770.1	Barley	plastid	63.82	70.45
Os05t0503300-02	Rice	plastid	65.12	70.2
TraesCS1A01G323400.1	Wheat	golgi	64.4	70.08
TraesCS1D01G324200.1	Wheat	plastid	64.11	69.65
HORVU0Hr1G026700.1	Barley	plastid	64.83	66.97
HORVU6Hr1G071510.2	Barley	cytosol	13.02	62.5
Solyc10g050890.1.1	Tomato	plastid	19.97	23.63
Solyc01g108630.2.1	Tomato	plastid	19.83	23.34
Os02t0765800-00	Rice	peroxisome	3.62	20.49

Protein Annotations

KEGG:00920+1.8.1.2	KEGG:00920+1.8.7.1	MapMan:25.2.1.4	Gene3D:3.30.413.10	Gene3D:3.90.480.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005576	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006790	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009409	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009628	GO:GO:0009651
GO:GO:0009941	GO:GO:0009987	GO:GO:0010319	GO:GO:0016002	GO:GO:0016020	GO:GO:0016491
GO:GO:0019419	GO:GO:0020037	GO:GO:0048046	GO:GO:0050311	GO:GO:0051536	GO:GO:0051539
GO:GO:0055114	UniProt:H6WYS2	EMBL:JF811750	EMBL:JQ341913	InterPro:NO2/SO3_Rdtase_4Fe4S_dom	InterPro:NO2/SO3_Rdtase_FeS/sirohaem_BS
InterPro:NiRdtase/SiRdtase_haem-b_fer	InterPro:Nit/Sulf_reduc_fer_like_dom_sf	PFAM:PF01077	PFAM:PF03460	PRINTS:PR00397	ScanProsite:PS00365
PANTHER:PTHR11493	PANTHER:PTHR11493:SF58	SUPFAM:SSF55124	SUPFAM:SSF56014	InterPro:SiR_ferredoxin-dep	EnsemblPlantsGene:Solyc11g065620.1
EnsemblPlants:Solyc11g065620.1.1	TIGRFAMs:TIGR02042	UniParc:UPI00025286F8	SEG:seg	:	:

Description

Assimilatory sulfite reductase (ferredoxin), chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G04590) UniProtKB/Swiss-Prot;Acc:Q9LZ66]

Coordinates

chr11:+:51139649..51144003

Molecular Weight (calculated)

77919.3 Da

IEP (calculated)

9.659

GRAVY (calculated)

-0.420

Length

691 amino acids

Sequence
(BLAST)

001: MTTSFGAAIN IAAVDDPNPK LQIQRFNGLK STSNSILLSR RIHRSFSHSN STSIVRAVST PAKPAAVEPK RSKVEIFKEQ SNFIRYPLNE EILNDAPNIN
101: EAATQLIKFH GSYMQYNRDE RGSRSYSFML RTKNPGGEVP NKLYLVMDDL ADQFGIGTLR LTTRQTFQLH GVLKKDLKTV MSTIIHNMGS TLGACGDLNR
201: NVLAPAAPFA KKDYVFAKQT ADNIAALLTP QSGFYYDVWV DGEKFMSVEP PEVVKARNDN SHGTNFPDSP EPIYGTQFLP RKFKIAVTVP SDNSVDIFTN
301: DIGVVVVSDE DGEPQGFNIY VGGGMGRTHR METTFPRLAE PLGYVPKADI LYAVKAIVVT QRENGRRDDR RYSRLKYLLS SWGIEKFRSV TEQYYGKKFE
401: PCRELPQWEF KSYLGWHEQG DGSLFCGLHV DNGRVKGEMK KALREVIEKY NLNVRLTPNQ NIILSNIRQS WKRSITTVLA QGGLLQPRFV DPLNLTAMAC
501: PAFPLCPLAI TEAERGIPDI LKRVRAMFDK VGLRFYESVV IRVTGCPNGC ARPYMAELGL VGDGPNSYQI WLGGTPNQTV LARTFKDKVK VQDLEKVLEP
601: LFFHWKRKRQ SKESFGEFSN RLGFEKLGDL VEKWDGIPES SSRYNLKLFA DKETYQAMDA LARIQNKNAH QLAIDVIRNY VASQQNGKSM D

Best Arabidopsis Sequence Match ( AT5G04590.1 )
(BLAST)

001: MSSTFRAPAG AATVFTADQK IRLGRLDALR SSHSVFLGRY GRGGVPVPPS ASSSSSSPIQ AVSTPAKPET ATKRSKVEII KEKSNFIRYP LNEELLTEAP
101: NVNESAVQLI KFHGSYQQYN REERGGRSYS FMLRTKNPSG KVPNQLYLTM DDLADEFGIG TLRLTTRQTF QLHGVLKQNL KTVMSSIIKN MGSTLGACGD
201: LNRNVLAPAA PYVKKDYLFA QETADNIAAL LSPQSGFYYD MWVDGEQFMT AEPPEVVKAR NDNSHGTNFV DSPEPIYGTQ FLPRKFKVAV TVPTDNSVDL
301: LTNDIGVVVV SDENGEPQGF NIYVGGGMGR THRMESTFAR LAEPIGYVPK EDILYAVKAI VVTQREHGRR DDRKYSRMKY LISSWGIEKF RDVVEQYYGK
401: KFEPSRELPE WEFKSYLGWH EQGDGAWFCG LHVDSGRVGG IMKKTLREVI EKYKIDVRIT PNQNIVLCDI KTEWKRPITT VLAQAGLLQP EFVDPLNQTA
501: MACPAFPLCP LAITEAERGI PSILKRVRAM FEKVGLDYDE SVVIRVTGCP NGCARPYMAE LGLVGDGPNS YQVWLGGTPN LTQIARSFMD KVKVHDLEKV
601: CEPLFYHWKL ERQTKESFGE YTTRMGFEKL KELIDTYKGV SQ

Arabidopsis Description

SIRSIR [Source:UniProtKB/TrEMBL;Acc:A0A178UPZ1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.