Factsheet for PGSC0003DMT400026666

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 8
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g065620.1.1	Tomato	plastid	99.28	99.28
VIT_06s0004g02330.t01	Wine grape	plastid	79.31	79.77
KRH29037	Soybean	nucleus	79.02	79.48
KRH24061	Soybean	nucleus	78.0	78.34
GSMUA_Achr1P22900_001	Banana	plastid	76.7	77.03
CDY00681	Canola	plastid	71.35	76.67
CDY44868	Canola	plastid	71.49	76.59
HORVU7Hr1G034450.1	Barley	cytosol	35.89	76.54
Bra009441.1-P	Field mustard	plastid	71.35	76.2
AT5G04590.1	Thale cress	plastid	70.62	76.01
Bra001368.1-P	Field mustard	plastid	70.62	75.89
CDX73918	Canola	plastid	70.62	75.89
CDY66993	Canola	plastid	56.58	75.78
CDX70213	Canola	plastid	70.91	75.73
CDY41362	Canola	plastid	69.32	74.96
GSMUA_Achr6P25020_001	Banana	plastid	69.18	74.92
Bra034128.1-P	Field mustard	plastid	69.18	74.92
HORVU6Hr1G078400.1	Barley	cytosol	21.27	72.41
HORVU7Hr1G063980.1	Barley	cytosol	38.78	71.47
Zm00001d038625_P001	Maize	plastid	65.27	71.02
EES19776	Sorghum	plastid	65.12	70.64
TraesCS1B01G336300.1	Wheat	plastid	64.83	70.44
HORVU1Hr1G065770.1	Barley	plastid	63.68	70.29
HORVU2Hr1G007660.2	Barley	cytosol	38.93	70.23
Os05t0503300-02	Rice	plastid	64.98	70.05
TraesCS1A01G323400.1	Wheat	golgi	64.25	69.92
TraesCS1D01G324200.1	Wheat	plastid	63.97	69.5
HORVU0Hr1G026700.1	Barley	plastid	64.69	66.82
HORVU6Hr1G071510.2	Barley	cytosol	13.02	62.5
PGSC0003DMT400066399	Potato	cytosol	20.12	23.68
PGSC0003DMT400021310	Potato	plastid	19.83	23.46
Os02t0765800-00	Rice	peroxisome	3.62	20.49

Protein Annotations

KEGG:00920+1.8.1.2	KEGG:00920+1.8.7.1	EntrezGene:102601168	MapMan:25.2.1.4	Gene3D:3.30.413.10	Gene3D:3.90.480.10
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005576
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006790	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009409	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009628
GO:GO:0009651	GO:GO:0009941	GO:GO:0009987	GO:GO:0010319	GO:GO:0016002	GO:GO:0016020
GO:GO:0016491	GO:GO:0020037	GO:GO:0048046	GO:GO:0050311	GO:GO:0051536	GO:GO:0051539
GO:GO:0055114	UniProt:M1ANJ7	InterPro:NO2/SO3_Rdtase_4Fe4S_dom	InterPro:NO2/SO3_Rdtase_FeS/sirohaem_BS	InterPro:NiRdtase/SiRdtase_haem-b_fer	InterPro:Nit/Sulf_reduc_fer_like_dom_sf
PFAM:PF01077	PFAM:PF03460	EnsemblPlantsGene:PGSC0003DMG400010304	PGSC:PGSC0003DMG400010304	EnsemblPlants:PGSC0003DMT400026666	PRINTS:PR00397
ScanProsite:PS00365	PANTHER:PTHR11493	PANTHER:PTHR11493:SF58	SUPFAM:SSF55124	SUPFAM:SSF56014	InterPro:SiR_ferredoxin-dep
TIGRFAMs:TIGR02042	UniParc:UPI0002965CA8	RefSeq:XP_006351680.1	SEG:seg	:	:

Description

Sulfite reductase [Source:PGSC_GENE;Acc:PGSC0003DMG400010304]

Coordinates

chr11:+:37500866..37505888

Molecular Weight (calculated)

77986.4 Da

IEP (calculated)

9.645

GRAVY (calculated)

-0.412

Length

691 amino acids

Sequence
(BLAST)

001: MTTSFGAAIN IAAVDDSNPK LQIQRFNGLK STSNSILLSR RIHRSFSHSN STSIVRAVST PVKPAAVEPK RSKVEIFKEQ SNFIRYPLNE EILNDAPNIN
101: EAATQLIKFH GSYMQYNRDE RGSRSYSFML RTKNPGGEVP NKLYLVMDDL ADQFGIGTLR LTTRQTFQLH GVLKKDLKTV MSTIIHNMGS TLGACGDLNR
201: NVLAPAAPFA KKDYVFAKQT ADNIAALLTP QSGFYYDVWV DGEKFMTVEP PEVVKARNDN SHGTNFPDSP EPIYGTQFLP RKFKIAVTVP SDNSVDIFTN
301: DIGVVVVSDE DGEPQGFNIY VGGGMGRTHR METTFPRLAE PLGYVPKADI LYAVKAIVVT QRENGRRDDR RYSRLKYLLS SWGIEKFRSV TEQYYGKKFE
401: PCRELPQWEF KSYLGWHEQG DGSLFCGLHV DNGRVKGEMK KALREVIEKY NLNVRLTPNQ NIILSNIRQS WKRSITTVLA QGGLLQPRFV DPLNLTAMAC
501: PAFPLCPLAI TEAERGIPDI LKRVRAMFDK VGLRFYESVV IRVTGCPNGC ARPYMAELGL VGDGPNSYQI WLGGTPNQTV LARTFKDKVK VQDLEKVLEP
601: LFFYWKRKRH SKESFGEFSN RLGFEKLGDL VEKWDGIPES SSRYNLKLFA DKETYQAMDA LARIQNKNAH QLAIDVIRNY VASQQNGKSM D

Best Arabidopsis Sequence Match ( AT5G04590.1 )
(BLAST)

001: MSSTFRAPAG AATVFTADQK IRLGRLDALR SSHSVFLGRY GRGGVPVPPS ASSSSSSPIQ AVSTPAKPET ATKRSKVEII KEKSNFIRYP LNEELLTEAP
101: NVNESAVQLI KFHGSYQQYN REERGGRSYS FMLRTKNPSG KVPNQLYLTM DDLADEFGIG TLRLTTRQTF QLHGVLKQNL KTVMSSIIKN MGSTLGACGD
201: LNRNVLAPAA PYVKKDYLFA QETADNIAAL LSPQSGFYYD MWVDGEQFMT AEPPEVVKAR NDNSHGTNFV DSPEPIYGTQ FLPRKFKVAV TVPTDNSVDL
301: LTNDIGVVVV SDENGEPQGF NIYVGGGMGR THRMESTFAR LAEPIGYVPK EDILYAVKAI VVTQREHGRR DDRKYSRMKY LISSWGIEKF RDVVEQYYGK
401: KFEPSRELPE WEFKSYLGWH EQGDGAWFCG LHVDSGRVGG IMKKTLREVI EKYKIDVRIT PNQNIVLCDI KTEWKRPITT VLAQAGLLQP EFVDPLNQTA
501: MACPAFPLCP LAITEAERGI PSILKRVRAM FEKVGLDYDE SVVIRVTGCP NGCARPYMAE LGLVGDGPNS YQVWLGGTPN LTQIARSFMD KVKVHDLEKV
601: CEPLFYHWKL ERQTKESFGE YTTRMGFEKL KELIDTYKGV SQ

Arabidopsis Description

SIRSIR [Source:UniProtKB/TrEMBL;Acc:A0A178UPZ1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.