CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 9
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24061	Soybean	nucleus	94.32	94.19
VIT_06s0004g02330.t01	Wine grape	plastid	79.48	79.48
PGSC0003DMT400026666	Potato	extracellular	79.48	79.02
Solyc11g065620.1.1	Tomato	plastid	79.48	79.02
CDY66993	Canola	plastid	58.22	77.52
GSMUA_Achr1P22900_001	Banana	plastid	77.58	77.47
CDY00681	Canola	plastid	72.49	77.45
Bra001368.1-P	Field mustard	plastid	72.2	77.14
CDX73918	Canola	plastid	72.2	77.14
CDY41362	Canola	plastid	71.47	76.84
AT5G04590.1	Thale cress	plastid	71.76	76.79
Bra034128.1-P	Field mustard	plastid	71.18	76.65
HORVU7Hr1G034450.1	Barley	cytosol	35.95	76.23
CDY44868	Canola	plastid	71.32	75.97
Bra009441.1-P	Field mustard	plastid	71.03	75.42
CDX70213	Canola	plastid	70.74	75.12
GSMUA_Achr6P25020_001	Banana	plastid	68.7	73.98
HORVU6Hr1G078400.1	Barley	cytosol	21.83	73.89
Zm00001d038625_P001	Maize	plastid	67.1	72.6
TraesCS1B01G336300.1	Wheat	plastid	67.1	72.48
EES19776	Sorghum	plastid	66.96	72.21
TraesCS1A01G323400.1	Wheat	golgi	66.67	72.13
TraesCS1D01G324200.1	Wheat	plastid	66.67	72.01
HORVU1Hr1G065770.1	Barley	plastid	65.5	71.89
HORVU7Hr1G063980.1	Barley	cytosol	38.86	71.2
HORVU2Hr1G007660.2	Barley	cytosol	39.45	70.76
Os05t0503300-02	Rice	plastid	65.94	70.67
HORVU0Hr1G026700.1	Barley	plastid	67.25	69.06
HORVU6Hr1G071510.2	Barley	cytosol	13.54	64.58
KRH71138	Soybean	plastid, vacuole	19.94	22.64
KRH50280	Soybean	plastid	19.8	22.22
Os02t0765800-00	Rice	peroxisome	3.64	20.49

Protein Annotations

KEGG:00920+1.8.1.2	KEGG:00920+1.8.7.1	MapMan:25.2.1.4	Gene3D:3.30.413.10	Gene3D:3.90.480.10	EntrezGene:547693
EMBL:ACUP02006777	EnsemblPlantsGene:GLYMA_11G093200	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006259	GO:GO:0006260	GO:GO:0006275	GO:GO:0006323	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009532	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987
GO:GO:0016002	GO:GO:0016043	GO:GO:0016491	GO:GO:0019419	GO:GO:0019424	GO:GO:0020037
GO:GO:0042644	GO:GO:0045892	GO:GO:0046872	GO:GO:0050311	GO:GO:0051536	GO:GO:0051539
GO:GO:0055114	GO:GO:1900160	UniProt:I1LIJ6	EnsemblPlants:KRH29037	ProteinID:KRH29037	ProteinID:KRH29037.1
InterPro:NO2/SO3_Rdtase_4Fe4S_dom	InterPro:NO2/SO3_Rdtase_FeS/sirohaem_BS	InterPro:NiRdtase/SiRdtase_haem-b_fer	InterPro:Nit/Sulf_reduc_fer_like_dom_sf	PFAM:PF01077	PFAM:PF03460
PRINTS:PR00397	ScanProsite:PS00365	PANTHER:PTHR11493	PANTHER:PTHR11493:SF58	MetaCyc:PWY-6683	SUPFAM:SSF55124
SUPFAM:SSF56014	InterPro:SiR_ferredoxin-dep	TIGRFAMs:TIGR02042	UniParc:UPI00004A8CCE	SEG:seg	:

Description

hypothetical protein

Coordinates

chr11:+:7061666..7066152

Molecular Weight (calculated)

77268.5 Da

IEP (calculated)

9.563

GRAVY (calculated)

-0.413

Length

687 amino acids

Sequence
(BLAST)

001: MTTSFGPATT SAPLKDHKVQ IPSFHGLRSS SASALPRNAL SLPSSTRSLS LIRAVSTPAQ SETATVKRSK VEIFKEQSNF IRYPLNEDIL TDAPNISEAA
101: TQLIKFHGSY QQYNREERGS RSYSFMIRTK NPCGKVSNQL YLTMDDLADQ FGIGTLRLTT RQTFQLHGVL KKDLKTVMGT IIRNMGSTLG ACGDLNRNVL
201: APAAPLARKD YLFAQQTAEN IAALLAPQSG FYYDIWVDGE KILTSEPPEV VQARNDNSHG TNFPDSPEPI YGTQFLPRKF KIAVTVPTDN SVDILTNDIG
301: VVVVTDDDGE PQGFNIYVGG GMGRTHRLET TFPRLAEPIG YVPKEDILYA VKAIVVTQRE NGRRDDRKYS RLKYLISSWG IEKFRSVVEQ YYGKKFEPFR
401: ALPEWEFKSY LGWHEQGDGK LFYGLHVDNG RIGGNMKKTL REVIEKYNLN VRITPNQNII LTDVRAAWKR PITTTLAQAG LLQPRFVDPL NITAMACPAF
501: PLCPLAITEA ERGIPNILKR IRDVFDKVGL KYSESVVVRI TGCPNGCARP YMAELGLVGD GPNSYQIWLG GNHKQTSLAR SFMDRVKILD LEKVLEPLFY
601: YWKQKRQSKE SFGDFTNRMG FEKLKEYIEK WEGPVVAPSR HNLKLFADKE TYESMDALAK LQNKTAHQLA MEVIRNYVAS NQNGKGE

Best Arabidopsis Sequence Match ( AT5G04590.1 )
(BLAST)

001: MSSTFRAPAG AATVFTADQK IRLGRLDALR SSHSVFLGRY GRGGVPVPPS ASSSSSSPIQ AVSTPAKPET ATKRSKVEII KEKSNFIRYP LNEELLTEAP
101: NVNESAVQLI KFHGSYQQYN REERGGRSYS FMLRTKNPSG KVPNQLYLTM DDLADEFGIG TLRLTTRQTF QLHGVLKQNL KTVMSSIIKN MGSTLGACGD
201: LNRNVLAPAA PYVKKDYLFA QETADNIAAL LSPQSGFYYD MWVDGEQFMT AEPPEVVKAR NDNSHGTNFV DSPEPIYGTQ FLPRKFKVAV TVPTDNSVDL
301: LTNDIGVVVV SDENGEPQGF NIYVGGGMGR THRMESTFAR LAEPIGYVPK EDILYAVKAI VVTQREHGRR DDRKYSRMKY LISSWGIEKF RDVVEQYYGK
401: KFEPSRELPE WEFKSYLGWH EQGDGAWFCG LHVDSGRVGG IMKKTLREVI EKYKIDVRIT PNQNIVLCDI KTEWKRPITT VLAQAGLLQP EFVDPLNQTA
501: MACPAFPLCP LAITEAERGI PSILKRVRAM FEKVGLDYDE SVVIRVTGCP NGCARPYMAE LGLVGDGPNS YQVWLGGTPN LTQIARSFMD KVKVHDLEKV
601: CEPLFYHWKL ERQTKESFGE YTTRMGFEKL KELIDTYKGV SQ

Arabidopsis Description

SIRSIR [Source:UniProtKB/TrEMBL;Acc:A0A178UPZ1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.