Factsheet for VIT_06s0004g02330.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24061	Soybean	nucleus	80.06	79.94
KRH29037	Soybean	nucleus	79.48	79.48
Solyc11g065620.1.1	Tomato	plastid	79.91	79.45
GSMUA_Achr1P22900_001	Banana	plastid	79.48	79.36
PGSC0003DMT400026666	Potato	extracellular	79.77	79.31
HORVU7Hr1G034450.1	Barley	cytosol	36.54	77.47
CDY41362	Canola	plastid	71.47	76.84
Bra034128.1-P	Field mustard	plastid	71.32	76.8
CDY66993	Canola	plastid	57.5	76.55
CDY00681	Canola	plastid	71.47	76.36
CDY44868	Canola	plastid	71.62	76.28
GSMUA_Achr6P25020_001	Banana	plastid	70.74	76.18
AT5G04590.1	Thale cress	plastid	71.18	76.17
CDX73918	Canola	plastid	70.89	75.74
Bra001368.1-P	Field mustard	plastid	70.89	75.74
Bra009441.1-P	Field mustard	plastid	71.32	75.73
CDX70213	Canola	plastid	71.18	75.58
HORVU6Hr1G078400.1	Barley	cytosol	21.83	73.89
Zm00001d038625_P001	Maize	plastid	67.54	73.07
TraesCS1D01G324200.1	Wheat	plastid	67.54	72.96
TraesCS1A01G323400.1	Wheat	golgi	67.39	72.91
TraesCS1B01G336300.1	Wheat	plastid	67.25	72.64
EES19776	Sorghum	plastid	67.1	72.37
HORVU1Hr1G065770.1	Barley	plastid	65.65	72.04
Os05t0503300-02	Rice	plastid	67.1	71.92
HORVU7Hr1G063980.1	Barley	cytosol	39.01	71.47
HORVU2Hr1G007660.2	Barley	cytosol	39.16	70.23
HORVU0Hr1G026700.1	Barley	plastid	66.96	68.76
HORVU6Hr1G071510.2	Barley	cytosol	13.97	66.67
VIT_03s0063g00370.t01	Wine grape	plastid	18.63	21.51
Os02t0765800-00	Rice	peroxisome	3.49	19.67

Protein Annotations

KEGG:00920+1.8.1.2	KEGG:00920+1.8.7.1	EntrezGene:100245032	wikigene:100245032	MapMan:25.2.1.4	Gene3D:3.30.413.10
Gene3D:3.90.480.10	EMBL:AM466679	ProteinID:CAN79174	ProteinID:CAN79174.1	ProteinID:CBI16358	ProteinID:CBI16358.3
UniProt:D7SL30	EMBL:FN594951	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005507
GO:GO:0005575	GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006790
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009409	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009628	GO:GO:0009651	GO:GO:0009941	GO:GO:0009987	GO:GO:0010319
GO:GO:0016002	GO:GO:0016020	GO:GO:0016491	GO:GO:0019419	GO:GO:0020037	GO:GO:0048046
GO:GO:0050311	GO:GO:0051536	GO:GO:0051539	GO:GO:0055114	EntrezGene:LOC100245032	wikigene:LOC100245032
InterPro:NO2/SO3_Rdtase_4Fe4S_dom	InterPro:NO2/SO3_Rdtase_FeS/sirohaem_BS	InterPro:NiRdtase/SiRdtase_haem-b_fer	InterPro:Nit/Sulf_reduc_fer_like_dom_sf	PFAM:PF01077	PFAM:PF03460
PRINTS:PR00397	ScanProsite:PS00365	PANTHER:PTHR11493	PANTHER:PTHR11493:SF58	SUPFAM:SSF55124	SUPFAM:SSF56014
InterPro:SiR_ferredoxin-dep	TIGR:TC57875	TIGRFAMs:TIGR02042	UniParc:UPI0001983620	ArrayExpress:VIT_06s0004g02330	EnsemblPlantsGene:VIT_06s0004g02330
EnsemblPlants:VIT_06s0004g02330.t01	unigene:Vvi.7601	RefSeq:XP_002285398	RefSeq:XP_002285398.1	SEG:seg	:

Description

No Description!

Coordinates

chr6:+:2750389..2755670

Molecular Weight (calculated)

77362.9 Da

IEP (calculated)

9.669

GRAVY (calculated)

-0.411

Length

687 amino acids

Sequence
(BLAST)

001: MATSVGAANA AVFKDPKIQT QIQTFKAFKP WTALPVTTSR SRPRSSPSVI RAVSTPVKPD TTTSEPKRSK VEIFKEQSNF IRYPLNEELL TDAPNINEAA
101: TQLIKFHGSY QQANRDERGP KSYSFMLRTK NPCGKVPNKL YLAMDDLADE FGIGTLRLTT RQTFQLHGVL KKDLKTVMST IIRSMGSTLG ACGDLNRNVL
201: APAAPFARKD YLFAQETADN IAALLTPQSG FYYDMWVDGE RLMSAEPPEV TRARNDNSHG TNFLDSPEPI YGTQFLPRKF KVAVTVPTDN SVDIFTNDVG
301: VVVVSDANGE PLGFNIYVGG GMGRTHRLET TFPRLSESLG FVRKEDILYA VKAIVVTQRE NGRRDDRKYS RMKYLIDSWG IEKFRSVVEQ YYGKKFEPIH
401: ELPEWEFKSY LGWHEQGDGG LFCGLHVDNG RIGGKMKKTL REVIEKYNLD VRLTPNQNII LCNIRSAWKR PITTALAQAG LLHPRYVDPL NLTAMACPAL
501: PLCPLAITEA ERGIPDLLKR VRAVFEKVGL KYNESVVIRV TGCPNGCARP YMAELGLVGD GPNSYQIWLG GTPNQTSLAR TFMNKVKIQD LEKVFEPLFY
601: YWKRKRQTKE SFGNFTNRMG FEKLQELVDK WEGPVMSPSR FNLKLFADKE TYEAVDALAK LQNKNAHQLA MEVIRNFVAA QQNGKGE

Best Arabidopsis Sequence Match ( AT5G04590.1 )
(BLAST)

001: MSSTFRAPAG AATVFTADQK IRLGRLDALR SSHSVFLGRY GRGGVPVPPS ASSSSSSPIQ AVSTPAKPET ATKRSKVEII KEKSNFIRYP LNEELLTEAP
101: NVNESAVQLI KFHGSYQQYN REERGGRSYS FMLRTKNPSG KVPNQLYLTM DDLADEFGIG TLRLTTRQTF QLHGVLKQNL KTVMSSIIKN MGSTLGACGD
201: LNRNVLAPAA PYVKKDYLFA QETADNIAAL LSPQSGFYYD MWVDGEQFMT AEPPEVVKAR NDNSHGTNFV DSPEPIYGTQ FLPRKFKVAV TVPTDNSVDL
301: LTNDIGVVVV SDENGEPQGF NIYVGGGMGR THRMESTFAR LAEPIGYVPK EDILYAVKAI VVTQREHGRR DDRKYSRMKY LISSWGIEKF RDVVEQYYGK
401: KFEPSRELPE WEFKSYLGWH EQGDGAWFCG LHVDSGRVGG IMKKTLREVI EKYKIDVRIT PNQNIVLCDI KTEWKRPITT VLAQAGLLQP EFVDPLNQTA
501: MACPAFPLCP LAITEAERGI PSILKRVRAM FEKVGLDYDE SVVIRVTGCP NGCARPYMAE LGLVGDGPNS YQVWLGGTPN LTQIARSFMD KVKVHDLEKV
601: CEPLFYHWKL ERQTKESFGE YTTRMGFEKL KELIDTYKGV SQ

Arabidopsis Description

SIRSIR [Source:UniProtKB/TrEMBL;Acc:A0A178UPZ1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.