CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 9
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29037	Soybean	nucleus	94.19	94.32
VIT_06s0004g02330.t01	Wine grape	plastid	79.94	80.06
PGSC0003DMT400026666	Potato	extracellular	78.34	78.0
Solyc11g065620.1.1	Tomato	plastid	78.34	78.0
CDY66993	Canola	plastid	57.7	76.94
HORVU7Hr1G034450.1	Barley	cytosol	36.05	76.54
GSMUA_Achr1P22900_001	Banana	plastid	76.45	76.45
CDY41362	Canola	plastid	70.93	76.37
CDY00681	Canola	plastid	71.37	76.36
CDX73918	Canola	plastid	71.22	76.21
Bra001368.1-P	Field mustard	plastid	71.22	76.21
Bra034128.1-P	Field mustard	plastid	70.64	76.18
AT5G04590.1	Thale cress	plastid	71.08	76.17
CDX70213	Canola	plastid	71.08	75.58
CDY44868	Canola	plastid	70.78	75.5
Bra009441.1-P	Field mustard	plastid	70.64	75.12
GSMUA_Achr6P25020_001	Banana	plastid	68.75	74.14
HORVU6Hr1G078400.1	Barley	cytosol	21.8	73.89
Zm00001d038625_P001	Maize	plastid	67.3	72.91
TraesCS1A01G323400.1	Wheat	golgi	66.86	72.44
EES19776	Sorghum	plastid	67.01	72.37
TraesCS1B01G336300.1	Wheat	plastid	66.86	72.33
TraesCS1D01G324200.1	Wheat	plastid	66.72	72.17
HORVU1Hr1G065770.1	Barley	plastid	65.55	72.04
HORVU7Hr1G063980.1	Barley	cytosol	38.95	71.47
HORVU2Hr1G007660.2	Barley	cytosol	39.53	71.02
Os05t0503300-02	Rice	plastid	65.84	70.67
HORVU0Hr1G026700.1	Barley	plastid	67.3	69.21
HORVU6Hr1G071510.2	Barley	cytosol	13.81	65.97
KRH71138	Soybean	plastid, vacuole	19.62	22.31
KRH50280	Soybean	plastid	19.77	22.22
Os02t0765800-00	Rice	peroxisome	3.49	19.67

Protein Annotations

KEGG:00920+1.8.1.2	KEGG:00920+1.8.7.1	EntrezGene:100790764	MapMan:25.2.1.4	Gene3D:3.30.413.10	Gene3D:3.90.480.10
EMBL:ACUP02007166	EnsemblPlantsGene:GLYMA_12G019400	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016002
GO:GO:0016491	GO:GO:0019419	GO:GO:0020037	GO:GO:0050311	GO:GO:0051536	GO:GO:0051539
GO:GO:0055114	UniProt:I1LP98	EnsemblPlants:KRH24061	ProteinID:KRH24061	ProteinID:KRH24061.1	InterPro:NO2/SO3_Rdtase_4Fe4S_dom
InterPro:NO2/SO3_Rdtase_FeS/sirohaem_BS	InterPro:NiRdtase/SiRdtase_haem-b_fer	InterPro:Nit/Sulf_reduc_fer_like_dom_sf	PFAM:PF01077	PFAM:PF03460	PRINTS:PR00397
ScanProsite:PS00365	PANTHER:PTHR11493	PANTHER:PTHR11493:SF58	MetaCyc:PWY-6683	SUPFAM:SSF55124	SUPFAM:SSF56014
InterPro:SiR_ferredoxin-dep	TIGRFAMs:TIGR02042	UniParc:UPI000233D5CE	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr12:+:1358460..1363523

Molecular Weight (calculated)

77431.8 Da

IEP (calculated)

9.506

GRAVY (calculated)

-0.401

Length

688 amino acids

Sequence
(BLAST)

001: MTTSFGGPAT TSAPLKDTKL QIPSFHCFSS ASASALSRNA LSLPSSTRSF SLIRAVSTPA QSETATVKRS KVEIFKEQSN FIRYPLNEDM LTDAPNIGEA
101: ATQLIKFHGS YQQYNREERG SRSYSFMIRT KNPCGKVSNQ LYLTMDDLAD QFGIGTLRLT TRQTFQLHGV LKKDLKTVMA TIIRNMGSTL GACGDLNRNV
201: LAPAAPLVRK DYLFAQQTAE NIAALLAPQS GFYYDIWVDG EKFLTSEPPE VVQARNDNSH GTNFPDSPEP IYGTQFLPRK FKIAVTVPTD NSVDILTNDI
301: GVVVVMDDDG EPQGFNIYVG GGMGRTHRLE TTFPRLAEPL GYVPKEDILY AVKAIVVTQR ENGRRDDRKY SRLKYLISSW GIEKFRGVVE QYYGKKFEPF
401: RALPEWEFKS YLGWHEQGDG KFFYGLHVDN GRIGGKMKKT LREVIEKYNL NARITPNQNI ILTDVRAAWK RPITTTLAQA GLLQPRFVDP LNITAMACPA
501: FPLCPLAITE AERGIPNILK RIRAVFDKVG LKYSESVVVR ITGCPNGCAR PYMAELGLVG DGPNSYQIWL GGNHKQTSLA RSFMDRVKLL DLEKVLEPLF
601: YYWKQKRQSK ESFGDFTNRM GFEKLKEYIE KWEGPVVAPS RHNLKLFADK ETYEAMDELA KLQNKNAHQL AMEVIRNYVA TNQNGKGE

Best Arabidopsis Sequence Match ( AT5G04590.1 )
(BLAST)

001: MSSTFRAPAG AATVFTADQK IRLGRLDALR SSHSVFLGRY GRGGVPVPPS ASSSSSSPIQ AVSTPAKPET ATKRSKVEII KEKSNFIRYP LNEELLTEAP
101: NVNESAVQLI KFHGSYQQYN REERGGRSYS FMLRTKNPSG KVPNQLYLTM DDLADEFGIG TLRLTTRQTF QLHGVLKQNL KTVMSSIIKN MGSTLGACGD
201: LNRNVLAPAA PYVKKDYLFA QETADNIAAL LSPQSGFYYD MWVDGEQFMT AEPPEVVKAR NDNSHGTNFV DSPEPIYGTQ FLPRKFKVAV TVPTDNSVDL
301: LTNDIGVVVV SDENGEPQGF NIYVGGGMGR THRMESTFAR LAEPIGYVPK EDILYAVKAI VVTQREHGRR DDRKYSRMKY LISSWGIEKF RDVVEQYYGK
401: KFEPSRELPE WEFKSYLGWH EQGDGAWFCG LHVDSGRVGG IMKKTLREVI EKYKIDVRIT PNQNIVLCDI KTEWKRPITT VLAQAGLLQP EFVDPLNQTA
501: MACPAFPLCP LAITEAERGI PSILKRVRAM FEKVGLDYDE SVVIRVTGCP NGCARPYMAE LGLVGDGPNS YQVWLGGTPN LTQIARSFMD KVKVHDLEKV
601: CEPLFYHWKL ERQTKESFGE YTTRMGFEKL KELIDTYKGV SQ

Arabidopsis Description

SIRSIR [Source:UniProtKB/TrEMBL;Acc:A0A178UPZ1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.