Factsheet for TraesCS1A01G323400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G324200.1	Wheat	plastid	99.53	99.37
TraesCS1B01G336300.1	Wheat	plastid	99.06	98.9
HORVU1Hr1G065770.1	Barley	plastid	95.59	96.96
HORVU7Hr1G034450.1	Barley	cytosol	47.72	93.52
Os05t0503300-02	Rice	plastid	90.87	90.02
HORVU0Hr1G026700.1	Barley	plastid	94.65	89.84
EES19776	Sorghum	plastid	88.66	88.38
Zm00001d038625_P001	Maize	plastid	87.87	87.87
HORVU7Hr1G063980.1	Barley	cytosol	51.81	87.73
HORVU6Hr1G078400.1	Barley	cytosol	27.72	86.7
HORVU2Hr1G007660.2	Barley	cytosol	52.28	86.68
GSMUA_Achr6P25020_001	Banana	plastid	74.33	73.98
CDY66993	Canola	plastid	58.11	71.51
CDY00681	Canola	plastid	72.28	71.38
CDY41362	Canola	plastid	71.34	70.89
Bra034128.1-P	Field mustard	plastid	71.18	70.85
CDX73918	Canola	plastid	71.65	70.76
Bra001368.1-P	Field mustard	plastid	71.5	70.61
AT5G04590.1	Thale cress	plastid	71.18	70.41
CDY44868	Canola	plastid	71.34	70.23
Bra009441.1-P	Field mustard	plastid	71.34	70.02
CDX70213	Canola	plastid	71.18	69.86
GSMUA_Achr1P22900_001	Banana	plastid	73.23	67.59
VIT_06s0004g02330.t01	Wine grape	plastid	72.91	67.39
KRH24061	Soybean	nucleus	72.44	66.86
KRH29037	Soybean	nucleus	72.13	66.67
Solyc11g065620.1.1	Tomato	plastid	70.08	64.4
PGSC0003DMT400026666	Potato	extracellular	69.92	64.25
TraesCS6A01G333900.1	Wheat	plastid	21.1	22.45

Protein Annotations

KEGG:00920+1.8.1.2	KEGG:00920+1.8.7.1	MapMan:25.2.1.4	Gene3D:3.30.413.10	Gene3D:3.90.480.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0020037
GO:GO:0050311	GO:GO:0051536	GO:GO:0051539	GO:GO:0055114	InterPro:NO2/SO3_Rdtase_4Fe4S_dom	InterPro:NO2/SO3_Rdtase_FeS/sirohaem_BS
InterPro:NiRdtase/SiRdtase_haem-b_fer	InterPro:Nit/Sulf_reduc_fer_like_dom_sf	PFAM:PF01077	PFAM:PF03460	PRINTS:PR00397	ScanProsite:PS00365
PANTHER:PTHR11493	PANTHER:PTHR11493:SF48	SUPFAM:SSF55124	SUPFAM:SSF56014	InterPro:SiR_ferredoxin-dep	TIGRFAMs:TIGR02042
EnsemblPlantsGene:TraesCS1A01G323400	EnsemblPlants:TraesCS1A01G323400.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1A:-:513735735..513739518

Molecular Weight (calculated)

70078.7 Da

IEP (calculated)

8.090

GRAVY (calculated)

-0.354

Length

635 amino acids

Sequence
(BLAST)

001: MSAAVGGAEF HGFGGAAQLP RSRMLGRPVR VAPPGATPAG SGPSAASIRA VSTPLKKDAK EVKRSKVEII KEKSNFLRYP LNEELVSEAP NVNETAVQLI
101: KFHGSYQQSD REVRGQKNYS FMLRTKNPSG KVPNQTYLAM DTLADEFGIG TLRLTTRQTF QLHGVLKKNL KHVISTVIKN MGSTLGACGD LNRNVLAPAA
201: PYVRKDILFA QETAENIAAL LAPQSGAYYD LWVDGEKIMS AEEPPEVTKA RNDNSHGTNF PDSPEPIYGT QYLPRKFKIA VTVAGDNSVD ILTNDIGVVV
301: VSDSAGEPVG FNLYVGGGMG RTHRIETTFP RLADPLGYVP KEDILYAIKA IVVTQRENGR RDDRRYSRMK YLLDSWGIDK FRAEVEKYYG KKFEDFHPLP
401: EWQFNSYLGW QEQGDGKLFY GVHVDNGRLG GQAKKTLREI IEKYSLDVSI TPNQNLILCG VDQAWREPIT AALAQAGLLE PKDVDLLNIT SMACPALPLC
501: PLAQTEAERG ILPILKRIRA VFDKVGIKDE ESVVVRITGC PNGCARPYMA EVGFVGDGPN SYQIWLGGTP NQTTLAETFM NKVKLQDIEK VLEPLFSYWN
601: STRQEGESFG SFTNRMGFEQ LKEVVNKWEG SASAA

Best Arabidopsis Sequence Match ( AT5G04590.1 )
(BLAST)

001: MSSTFRAPAG AATVFTADQK IRLGRLDALR SSHSVFLGRY GRGGVPVPPS ASSSSSSPIQ AVSTPAKPET ATKRSKVEII KEKSNFIRYP LNEELLTEAP
101: NVNESAVQLI KFHGSYQQYN REERGGRSYS FMLRTKNPSG KVPNQLYLTM DDLADEFGIG TLRLTTRQTF QLHGVLKQNL KTVMSSIIKN MGSTLGACGD
201: LNRNVLAPAA PYVKKDYLFA QETADNIAAL LSPQSGFYYD MWVDGEQFMT AEPPEVVKAR NDNSHGTNFV DSPEPIYGTQ FLPRKFKVAV TVPTDNSVDL
301: LTNDIGVVVV SDENGEPQGF NIYVGGGMGR THRMESTFAR LAEPIGYVPK EDILYAVKAI VVTQREHGRR DDRKYSRMKY LISSWGIEKF RDVVEQYYGK
401: KFEPSRELPE WEFKSYLGWH EQGDGAWFCG LHVDSGRVGG IMKKTLREVI EKYKIDVRIT PNQNIVLCDI KTEWKRPITT VLAQAGLLQP EFVDPLNQTA
501: MACPAFPLCP LAITEAERGI PSILKRVRAM FEKVGLDYDE SVVIRVTGCP NGCARPYMAE LGLVGDGPNS YQVWLGGTPN LTQIARSFMD KVKVHDLEKV
601: CEPLFYHWKL ERQTKESFGE YTTRMGFEKL KELIDTYKGV SQ

Arabidopsis Description

SIRSIR [Source:UniProtKB/TrEMBL;Acc:A0A178UPZ1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.