Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- cytosol 1
- mitochondrion 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plastid:
28183294
nucleus: 28394025 extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID:
28183294
doi
Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400066399 | Potato | cytosol | 98.81 | 98.81 |
CDY69481 | Canola | mitochondrion | 64.57 | 82.39 |
Bra039844.1-P | Field mustard | cytosol | 70.87 | 82.05 |
Solyc10g050890.1.1 | Tomato | plastid | 81.26 | 81.68 |
AT2G15620.1 | Thale cress | plastid | 77.34 | 77.47 |
CDY37232 | Canola | plastid | 77.0 | 77.4 |
CDX71230 | Canola | plastid | 77.0 | 77.13 |
Os02t0765900-00 | Rice | cytosol | 36.46 | 76.98 |
CDY36642 | Canola | plastid | 76.83 | 76.96 |
CDY72359 | Canola | plastid | 53.66 | 76.64 |
VIT_03s0063g00370.t01 | Wine grape | plastid | 77.51 | 76.47 |
Bra015227.1-P | Field mustard | plastid | 76.49 | 76.23 |
KRH71138 | Soybean | plastid, vacuole | 78.02 | 75.7 |
KRH50280 | Soybean | plastid | 77.17 | 74.02 |
EES07578 | Sorghum | plastid | 73.25 | 72.51 |
GSMUA_Achr9P15320_001 | Banana | plastid | 74.11 | 70.85 |
TraesCS6A01G333900.1 | Wheat | plastid | 71.55 | 70.35 |
TraesCS6D01G313100.1 | Wheat | plastid | 71.55 | 70.35 |
Zm00001d052164_P002 | Maize | plastid | 70.7 | 69.51 |
Zm00001d052165_P001 | Maize | plastid | 70.7 | 69.51 |
Zm00001d018161_P001 | Maize | plastid | 71.04 | 68.81 |
TraesCS6B01G364600.1 | Wheat | plastid | 71.21 | 66.35 |
Os01t0357100-02 | Rice | plastid | 70.7 | 66.19 |
HORVU6Hr1G080750.4 | Barley | plastid | 71.72 | 63.6 |
Solyc11g065620.1.1 | Tomato | plastid | 23.34 | 19.83 |
Protein Annotations
KEGG:00920+1.8.1.2 | MapMan:25.1.4.2 | Gene3D:3.30.413.10 | Gene3D:3.90.480.20 | GO:GO:0003674 | GO:GO:0003824 |
GO:GO:0005488 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 | GO:GO:0020037 | GO:GO:0051536 |
GO:GO:0055114 | UniProt:K4B378 | InterPro:NO2/SO3_Rdtase_4Fe4S_dom | InterPro:NO2/SO3_Rdtase_FeS/sirohaem_BS | InterPro:NiRdtase/SiRdtase_haem-b_fer | InterPro:Nit/Sulf_reduc_fer_like_dom_sf |
PFAM:PF01077 | PFAM:PF03460 | PRINTS:PR00397 | ScanProsite:PS00365 | PANTHER:PTHR32439 | PANTHER:PTHR32439:SF0 |
SUPFAM:SSF55124 | SUPFAM:SSF56014 | EnsemblPlantsGene:Solyc01g108630.2 | EnsemblPlants:Solyc01g108630.2.1 | UniParc:UPI0001950C14 | SEG:seg |
Description
No Description!
Coordinates
chr1:+:95879833..95882578
Molecular Weight (calculated)
65896.5 Da
IEP (calculated)
5.984
GRAVY (calculated)
-0.361
Length
587 amino acids
Sequence
(BLAST)
(BLAST)
001: MASFSIKFLA PSLPNPTRFS KSSIVKLNAT PPQTVAAAGP PEVAAERLEP RVEEKDGYWI LKEQFRQGIN PQEKVKIEKE PMKLFMENGI EELAKIPIEE
101: IDQSKLTKDD IDVRLKWLGL FHRRKNQYGR FMMRLKLPNG VTTSAQTRYL ASVIRKYGEE GCADITTRQN WQIRGVVLPD VPEILKGLEE VGLTSLQSGM
201: DNVRNPVGNP LAGIDPEEIV DTRPYTNLLS QFITGNSRGN PAVSNLPRKW NPCVVGSHDL YEHPHINDLA YMPAIKDGRF GFNLLVGGFF SAKRCDEAIP
301: LDAWVPADDV VPVCKAILEA FRDLGFRGNR QKCRMMWLID ELGVEGFRAE VVKRMPQQEL ERASPEDLVQ KQWERRDYLG VHPQKQEGYS FIGLHIPVGR
401: VQADDMDDLA RLADEYGSGE LRLTVEQNII IPNIENSKID ALLKEPILSK FSPDPPILMK GLVACTGNQF CGQAIIETKA RSLKITEEVQ RQVSLTRPVR
501: MHWTGCPNTC AQVQVADIGF MGCLTRDKDK KTVEGADVFL GGRIGSDSHL GEVYKKAVPC DELVPLIVDL LIKNFGAVPR EREETED
101: IDQSKLTKDD IDVRLKWLGL FHRRKNQYGR FMMRLKLPNG VTTSAQTRYL ASVIRKYGEE GCADITTRQN WQIRGVVLPD VPEILKGLEE VGLTSLQSGM
201: DNVRNPVGNP LAGIDPEEIV DTRPYTNLLS QFITGNSRGN PAVSNLPRKW NPCVVGSHDL YEHPHINDLA YMPAIKDGRF GFNLLVGGFF SAKRCDEAIP
301: LDAWVPADDV VPVCKAILEA FRDLGFRGNR QKCRMMWLID ELGVEGFRAE VVKRMPQQEL ERASPEDLVQ KQWERRDYLG VHPQKQEGYS FIGLHIPVGR
401: VQADDMDDLA RLADEYGSGE LRLTVEQNII IPNIENSKID ALLKEPILSK FSPDPPILMK GLVACTGNQF CGQAIIETKA RSLKITEEVQ RQVSLTRPVR
501: MHWTGCPNTC AQVQVADIGF MGCLTRDKDK KTVEGADVFL GGRIGSDSHL GEVYKKAVPC DELVPLIVDL LIKNFGAVPR EREETED
001: MTSFSLTFTS PLLPSSSTKP KRSVLVAAAQ TTAPAESTAS VDADRLEPRV ELKDGFFILK EKFRKGINPQ EKVKIEREPM KLFMENGIEE LAKKSMEELD
101: SEKSSKDDID VRLKWLGLFH RRKHQYGKFM MRLKLPNGVT TSAQTRYLAS VIRKYGEDGC ADVTTRQNWQ IRGVVLPDVP EILKGLASVG LTSLQSGMDN
201: VRNPVGNPIA GIDPEEIVDT RPYTNLLSQF ITANSQGNPD FTNLPRKWNV CVVGTHDLYE HPHINDLAYM PANKDGRFGF NLLVGGFFSP KRCEEAIPLD
301: AWVPADDVLP LCKAVLEAYR DLGTRGNRQK TRMMWLIDEL GVEGFRTEVE KRMPNGKLER GSSEDLVNKQ WERRDYFGVN PQKQEGLSFV GLHVPVGRLQ
401: ADDMDELARL ADTYGSGELR LTVEQNIIIP NVETSKTEAL LQEPFLKNRF SPEPSILMKG LVACTGSQFC GQAIIETKLR ALKVTEEVER LVSVPRPIRM
501: HWTGCPNTCG QVQVADIGFM GCLTRGEEGK PVEGADVYVG GRIGSDSHIG EIYKKGVRVT ELVPLVAEIL IKEFGAVPRE REENED
101: SEKSSKDDID VRLKWLGLFH RRKHQYGKFM MRLKLPNGVT TSAQTRYLAS VIRKYGEDGC ADVTTRQNWQ IRGVVLPDVP EILKGLASVG LTSLQSGMDN
201: VRNPVGNPIA GIDPEEIVDT RPYTNLLSQF ITANSQGNPD FTNLPRKWNV CVVGTHDLYE HPHINDLAYM PANKDGRFGF NLLVGGFFSP KRCEEAIPLD
301: AWVPADDVLP LCKAVLEAYR DLGTRGNRQK TRMMWLIDEL GVEGFRTEVE KRMPNGKLER GSSEDLVNKQ WERRDYFGVN PQKQEGLSFV GLHVPVGRLQ
401: ADDMDELARL ADTYGSGELR LTVEQNIIIP NVETSKTEAL LQEPFLKNRF SPEPSILMKG LVACTGSQFC GQAIIETKLR ALKVTEEVER LVSVPRPIRM
501: HWTGCPNTCG QVQVADIGFM GCLTRGEEGK PVEGADVYVG GRIGSDSHIG EIYKKGVRVT ELVPLVAEIL IKEFGAVPRE REENED
Arabidopsis Description
NIR1Ferredoxin--nitrite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q39161]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.