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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 9
  • cytosol 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:mitochondrion, plastid
Predotar:mitochondrion
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
plastid: 28183294
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 28183294 doi
R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti
Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400066399 Potato cytosol 98.81 98.81
CDY69481 Canola mitochondrion 64.57 82.39
Bra039844.1-P Field mustard cytosol 70.87 82.05
Solyc10g050890.1.1 Tomato plastid 81.26 81.68
AT2G15620.1 Thale cress plastid 77.34 77.47
CDY37232 Canola plastid 77.0 77.4
CDX71230 Canola plastid 77.0 77.13
Os02t0765900-00 Rice cytosol 36.46 76.98
CDY36642 Canola plastid 76.83 76.96
CDY72359 Canola plastid 53.66 76.64
VIT_03s0063g00370.t01 Wine grape plastid 77.51 76.47
Bra015227.1-P Field mustard plastid 76.49 76.23
KRH71138 Soybean plastid, vacuole 78.02 75.7
KRH50280 Soybean plastid 77.17 74.02
EES07578 Sorghum plastid 73.25 72.51
GSMUA_Achr9P15320_001 Banana plastid 74.11 70.85
TraesCS6A01G333900.1 Wheat plastid 71.55 70.35
TraesCS6D01G313100.1 Wheat plastid 71.55 70.35
Zm00001d052164_P002 Maize plastid 70.7 69.51
Zm00001d052165_P001 Maize plastid 70.7 69.51
Zm00001d018161_P001 Maize plastid 71.04 68.81
TraesCS6B01G364600.1 Wheat plastid 71.21 66.35
Os01t0357100-02 Rice plastid 70.7 66.19
HORVU6Hr1G080750.4 Barley plastid 71.72 63.6
Solyc11g065620.1.1 Tomato plastid 23.34 19.83
Protein Annotations
KEGG:00920+1.8.1.2MapMan:25.1.4.2Gene3D:3.30.413.10Gene3D:3.90.480.20GO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0008150GO:GO:0008152GO:GO:0016491GO:GO:0020037GO:GO:0051536
GO:GO:0055114UniProt:K4B378InterPro:NO2/SO3_Rdtase_4Fe4S_domInterPro:NO2/SO3_Rdtase_FeS/sirohaem_BSInterPro:NiRdtase/SiRdtase_haem-b_ferInterPro:Nit/Sulf_reduc_fer_like_dom_sf
PFAM:PF01077PFAM:PF03460PRINTS:PR00397ScanProsite:PS00365PANTHER:PTHR32439PANTHER:PTHR32439:SF0
SUPFAM:SSF55124SUPFAM:SSF56014EnsemblPlantsGene:Solyc01g108630.2EnsemblPlants:Solyc01g108630.2.1UniParc:UPI0001950C14SEG:seg
Description
No Description!
Coordinates
chr1:+:95879833..95882578
Molecular Weight (calculated)
65896.5 Da
IEP (calculated)
5.984
GRAVY (calculated)
-0.361
Length
587 amino acids
Sequence
(BLAST)
001: MASFSIKFLA PSLPNPTRFS KSSIVKLNAT PPQTVAAAGP PEVAAERLEP RVEEKDGYWI LKEQFRQGIN PQEKVKIEKE PMKLFMENGI EELAKIPIEE
101: IDQSKLTKDD IDVRLKWLGL FHRRKNQYGR FMMRLKLPNG VTTSAQTRYL ASVIRKYGEE GCADITTRQN WQIRGVVLPD VPEILKGLEE VGLTSLQSGM
201: DNVRNPVGNP LAGIDPEEIV DTRPYTNLLS QFITGNSRGN PAVSNLPRKW NPCVVGSHDL YEHPHINDLA YMPAIKDGRF GFNLLVGGFF SAKRCDEAIP
301: LDAWVPADDV VPVCKAILEA FRDLGFRGNR QKCRMMWLID ELGVEGFRAE VVKRMPQQEL ERASPEDLVQ KQWERRDYLG VHPQKQEGYS FIGLHIPVGR
401: VQADDMDDLA RLADEYGSGE LRLTVEQNII IPNIENSKID ALLKEPILSK FSPDPPILMK GLVACTGNQF CGQAIIETKA RSLKITEEVQ RQVSLTRPVR
501: MHWTGCPNTC AQVQVADIGF MGCLTRDKDK KTVEGADVFL GGRIGSDSHL GEVYKKAVPC DELVPLIVDL LIKNFGAVPR EREETED
Best Arabidopsis Sequence Match ( AT2G15620.1 )
(BLAST)
001: MTSFSLTFTS PLLPSSSTKP KRSVLVAAAQ TTAPAESTAS VDADRLEPRV ELKDGFFILK EKFRKGINPQ EKVKIEREPM KLFMENGIEE LAKKSMEELD
101: SEKSSKDDID VRLKWLGLFH RRKHQYGKFM MRLKLPNGVT TSAQTRYLAS VIRKYGEDGC ADVTTRQNWQ IRGVVLPDVP EILKGLASVG LTSLQSGMDN
201: VRNPVGNPIA GIDPEEIVDT RPYTNLLSQF ITANSQGNPD FTNLPRKWNV CVVGTHDLYE HPHINDLAYM PANKDGRFGF NLLVGGFFSP KRCEEAIPLD
301: AWVPADDVLP LCKAVLEAYR DLGTRGNRQK TRMMWLIDEL GVEGFRTEVE KRMPNGKLER GSSEDLVNKQ WERRDYFGVN PQKQEGLSFV GLHVPVGRLQ
401: ADDMDELARL ADTYGSGELR LTVEQNIIIP NVETSKTEAL LQEPFLKNRF SPEPSILMKG LVACTGSQFC GQAIIETKLR ALKVTEEVER LVSVPRPIRM
501: HWTGCPNTCG QVQVADIGFM GCLTRGEEGK PVEGADVYVG GRIGSDSHIG EIYKKGVRVT ELVPLVAEIL IKEFGAVPRE REENED
Arabidopsis Description
NIR1Ferredoxin--nitrite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q39161]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.