CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 1
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G15620.1	CDY32970	AT5G42980.1	15352244
AT2G15620.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37232	Canola	plastid	98.26	77.4
CDX71230	Canola	plastid	94.78	74.4
CDY36642	Canola	plastid	93.91	73.72
AT2G15620.1	Thale cress	plastid	93.7	73.55
PGSC0003DMT400021310	Potato	plastid	82.39	64.9
Os02t0765900-00	Rice	cytosol	39.13	64.75
PGSC0003DMT400066399	Potato	cytosol	82.61	64.74
CDY72359	Canola	plastid	57.83	64.72
Solyc01g108630.2.1	Tomato	plastid	82.39	64.57
Solyc10g050890.1.1	Tomato	plastid	81.74	64.38
VIT_03s0063g00370.t01	Wine grape	plastid	83.04	64.2
KRH71138	Soybean	plastid, vacuole	84.35	64.13
KRH50280	Soybean	plastid	83.91	63.07
EES07578	Sorghum	plastid	77.83	60.37
TraesCS6D01G313100.1	Wheat	plastid	77.39	59.63
TraesCS6A01G333900.1	Wheat	plastid	77.17	59.46
Zm00001d052164_P002	Maize	plastid	76.96	59.3
Zm00001d052165_P001	Maize	plastid	76.96	59.3
GSMUA_Achr9P15320_001	Banana	plastid	78.7	58.96
Zm00001d018161_P001	Maize	plastid	76.52	58.09
TraesCS6B01G364600.1	Wheat	plastid	77.39	56.51
Os01t0357100-02	Rice	plastid	76.74	56.3
HORVU6Hr1G080750.4	Barley	plastid	78.04	54.23
CDY66993	Canola	plastid	20.22	18.02
CDY44868	Canola	plastid	25.22	17.98
CDX70213	Canola	plastid	25.0	17.77
CDY41362	Canola	plastid	24.57	17.68
CDY00681	Canola	plastid	24.35	17.42
CDX73918	Canola	plastid	24.35	17.42

Protein Annotations

KEGG:00920+1.8.1.2	MapMan:25.1.4.2	Gene3D:3.30.413.10	Gene3D:3.90.480.20	GO:A0A078JV64	UniProt:A0A078JV64
EnsemblPlants:CDY69481	ProteinID:CDY69481	ProteinID:CDY69481.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0020037	GO:GO:0051536
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00088147001	InterPro:NO2/SO3_Rdtase_4Fe4S_dom	InterPro:NO2/SO3_Rdtase_FeS/sirohaem_BS	InterPro:NiRdtase/SiRdtase_haem-b_fer	InterPro:Nit/Sulf_reduc_fer_like_dom_sf
PFAM:PF01077	PFAM:PF03460	PRINTS:PR00397	ScanProsite:PS00365	PANTHER:PTHR32439	PANTHER:PTHR32439:SF0
MetaCyc:PWY-6683	SUPFAM:SSF55124	SUPFAM:SSF56014	UniPathway:UPA00140	UniParc:UPI0004EE7FDA	:

Description

BnaCnng63770DBnaCnng63770D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JV64]

Coordinates

chrLK039532:-:2398..4072

Molecular Weight (calculated)

50821.0 Da

IEP (calculated)

5.730

GRAVY (calculated)

-0.284

Length

460 amino acids

Sequence
(BLAST)

001: GKFMMRLKLP NGVTTSAQTR YLASVIRKYG EDGCADVTTR QNWQIRGVVL PDVPEILKGL ASVGLTSLQS GMDNVRNPVG NPIAGIDPDE IVDTRPYTNL
101: LSHFITANSR GNPDFSNLPR KWNVCVVGSH DLYEHPHIND LAYMPANKDG RFGFNLLVGG FFSAKRCEEA IPLDAWVPAD DVLPLCGAVL EAFRDLGTRG
201: NRQKTRMMWL IDELGIEGFR AEVEKRMPSG KLERESSEDL VNKQWERRDY FGVHPQKQEG LSYIGLHCPV GRLQADDMDE LARLADTYGS GELRLTVEQN
301: IIIPNVETSK TQALLQEPFL KNRFSPEPSI LMKGLVACTG SQFCGQAIIE TKLRALKVTE EVERLVAVPK PVRMHWTGCP NTCGQVQVAD IGFMGCLTRG
401: ENGKAVEGAD VYVGGRIGSD SHVGEIYKKG VPVTDLAPLV AEILVKEFGA VPRVREENED

Best Arabidopsis Sequence Match ( AT2G15620.1 )
(BLAST)

001: MTSFSLTFTS PLLPSSSTKP KRSVLVAAAQ TTAPAESTAS VDADRLEPRV ELKDGFFILK EKFRKGINPQ EKVKIEREPM KLFMENGIEE LAKKSMEELD
101: SEKSSKDDID VRLKWLGLFH RRKHQYGKFM MRLKLPNGVT TSAQTRYLAS VIRKYGEDGC ADVTTRQNWQ IRGVVLPDVP EILKGLASVG LTSLQSGMDN
201: VRNPVGNPIA GIDPEEIVDT RPYTNLLSQF ITANSQGNPD FTNLPRKWNV CVVGTHDLYE HPHINDLAYM PANKDGRFGF NLLVGGFFSP KRCEEAIPLD
301: AWVPADDVLP LCKAVLEAYR DLGTRGNRQK TRMMWLIDEL GVEGFRTEVE KRMPNGKLER GSSEDLVNKQ WERRDYFGVN PQKQEGLSFV GLHVPVGRLQ
401: ADDMDELARL ADTYGSGELR LTVEQNIIIP NVETSKTEAL LQEPFLKNRF SPEPSILMKG LVACTGSQFC GQAIIETKLR ALKVTEEVER LVSVPRPIRM
501: HWTGCPNTCG QVQVADIGFM GCLTRGEEGK PVEGADVYVG GRIGSDSHIG EIYKKGVRVT ELVPLVAEIL IKEFGAVPRE REENED

Arabidopsis Description

NIR1Ferredoxin--nitrite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q39161]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.