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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:
  • plastid 2
  • mitochondrion 1
  • endoplasmic reticulum 4
  • extracellular 3
  • vacuole 3
  • plasma membrane 4
  • golgi 3
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, plasma membrane
Any Predictor:plastid, secretory
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX78905
CDX84204
CDX98596
CDX99411
CDY01565
CDY31690
CDY32126

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G04160.1 CDX84204 AT2G35470.1 21798944
AT5G04160.1 CDY31690 AT2G35470.1 21798944
AT5G04160.1 CDY32126 AT2G35470.1 21798944
AT5G04160.1 CDX78905 AT4G19030.1 21798944
AT5G04160.1 CDX98596 AT4G19030.1 21798944
AT5G04160.1 CDX99411 AT4G19030.1 21798944
AT5G04160.1 CDY01565 AT4G19030.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY41396 Canola endoplasmic reticulum, plasma membrane 99.68 99.68
Bra009481.1-P Field mustard endoplasmic reticulum, plasma membrane 99.36 99.36
AT5G04160.1 Thale cress endoplasmic reticulum, plasma membrane 96.78 97.41
CDY71741 Canola endoplasmic reticulum, plasma membrane 86.5 93.73
CDX88102 Canola endoplasmic reticulum, mitochondrion, plasma membrane 92.93 89.2
CDY16783 Canola endoplasmic reticulum, mitochondrion, plasma membrane 92.93 89.2
CDY06070 Canola endoplasmic reticulum, mitochondrion, plasma membrane 92.93 89.2
CDY19068 Canola endoplasmic reticulum, mitochondrion, plasma membrane 92.93 89.2
CDY30718 Canola endoplasmic reticulum, mitochondrion, plasma membrane 92.93 89.2
CDY32060 Canola endoplasmic reticulum, mitochondrion, plasma membrane 92.93 89.2
CDY38198 Canola endoplasmic reticulum, mitochondrion, plasma membrane 92.93 89.2
CDY40726 Canola endoplasmic reticulum, mitochondrion, plasma membrane 92.93 89.2
CDY41333 Canola endoplasmic reticulum, mitochondrion, plasma membrane 92.93 89.2
CDY43207 Canola endoplasmic reticulum, mitochondrion, plasma membrane 92.93 89.2
CDY56711 Canola endoplasmic reticulum, mitochondrion, plasma membrane 92.93 89.2
CDY63119 Canola endoplasmic reticulum, mitochondrion, plasma membrane 92.93 89.2
CDY64269 Canola endoplasmic reticulum, mitochondrion, plasma membrane 92.93 89.2
CDX76352 Canola endoplasmic reticulum, mitochondrion, plasma membrane 92.93 89.2
CDY00918 Canola endoplasmic reticulum, extracellular, plasma membrane 34.08 89.08
CDX80906 Canola endoplasmic reticulum, plasma membrane 78.46 87.46
VIT_08s0007g08970.t01 Wine grape plastid 84.89 83.28
CDY00919 Canola extracellular 21.54 81.71
PGSC0003DMT400021093 Potato endoplasmic reticulum, plasma membrane 80.06 80.32
Solyc10g079280.1.1 Tomato endoplasmic reticulum, plasma membrane 79.74 80.0
Solyc10g079910.1.1 Tomato endoplasmic reticulum, plasma membrane 79.1 79.35
PGSC0003DMT400033107 Potato endoplasmic reticulum, plasma membrane 66.88 79.09
PGSC0003DMT400076739 Potato plasma membrane 78.78 79.03
Solyc04g016280.2.1 Tomato endoplasmic reticulum, plasma membrane 78.14 78.39
CDY36312 Canola endoplasmic reticulum, extracellular 27.97 73.73
CDY53550 Canola mitochondrion, plastid 92.93 72.61
KRH66884 Soybean peroxisome 81.03 72.41
KRG95205 Soybean peroxisome 81.35 72.29
CDY42695 Canola endoplasmic reticulum, plasma membrane 92.93 72.25
CDY01011 Canola plasma membrane 70.42 71.1
CDY00731 Canola endoplasmic reticulum, plasma membrane 69.45 70.59
CDY08536 Canola endoplasmic reticulum, plasma membrane 70.1 70.32
CDX73882 Canola endoplasmic reticulum, plasma membrane 69.13 70.26
CDX98868 Canola endoplasmic reticulum, plasma membrane 68.81 69.93
CDX70125 Canola endoplasmic reticulum, plasma membrane 68.49 69.61
CDY11341 Canola plasma membrane 68.17 69.28
CDX80975 Canola endoplasmic reticulum, plasma membrane 68.17 69.28
CDY36328 Canola endoplasmic reticulum, plasma membrane, vacuole 32.48 68.24
CDY30085 Canola endoplasmic reticulum, mitochondrion, peroxisome, plasma membrane, plastid 55.63 47.92
CDX98058 Canola plastid 55.31 47.65
CDY21054 Canola plastid 55.31 47.65
CDY58615 Canola cytosol, endoplasmic reticulum, peroxisome, plastid 54.98 47.37
CDX68051 Canola plasma membrane 32.48 30.06
CDX79213 Canola plasma membrane 32.48 30.06
CDX87511 Canola plasma membrane 32.15 29.67
CDX88379 Canola plasma membrane 31.83 29.38
CDX96572 Canola plasma membrane 31.83 28.95
CDY38825 Canola plasma membrane 31.51 28.66
CDX88177 Canola endoplasmic reticulum, plasma membrane, vacuole 29.58 26.59
CDY05491 Canola endoplasmic reticulum, plasma membrane, vacuole 29.58 26.59
CDX80508 Canola endoplasmic reticulum, plasma membrane, vacuole 29.58 26.59
CDY61664 Canola endoplasmic reticulum, plasma membrane, vacuole 29.9 26.57
CDY63382 Canola peroxisome, plasma membrane, plastid 14.47 26.32
CDY70208 Canola peroxisome, plasma membrane, plastid 14.47 26.32
CDY38193 Canola peroxisome, plasma membrane, plastid 14.47 26.32
CDY25067 Canola peroxisome, plasma membrane, plastid 14.47 26.32
CDX69775 Canola endoplasmic reticulum, plasma membrane, vacuole 29.58 26.29
CDY35355 Canola endoplasmic reticulum, plasma membrane, vacuole 28.94 26.09
CDX76991 Canola endoplasmic reticulum, plasma membrane, vacuole 28.94 26.09
CDX76757 Canola endoplasmic reticulum, plasma membrane, vacuole 29.26 26.07
CDY11527 Canola endoplasmic reticulum, plasma membrane, vacuole 29.26 26.07
CDX78413 Canola endoplasmic reticulum, plasma membrane, vacuole 29.26 26.0
CDX70384 Canola endoplasmic reticulum, plasma membrane, vacuole 28.94 25.71
CDX68840 Canola endoplasmic reticulum, plasma membrane, vacuole 28.94 25.64
CDX75240 Canola endoplasmic reticulum, plasma membrane, vacuole 28.62 25.36
CDX98450 Canola plasma membrane 26.69 24.56
CDX97572 Canola plasma membrane 26.69 23.92
CDY43289 Canola plasma membrane 27.33 23.35
CDY39113 Canola plasma membrane 27.01 23.33
CDY33222 Canola golgi, peroxisome, plasma membrane 26.69 23.06
CDY41853 Canola plasma membrane 27.33 23.04
CDX93651 Canola plasma membrane 27.33 23.04
CDY66383 Canola plasma membrane 19.29 22.9
CDY63022 Canola plasma membrane 27.33 22.85
CDY48700 Canola plasma membrane 27.33 22.85
CDX77330 Canola plasma membrane 27.01 22.76
CDX92132 Canola plasma membrane 20.9 20.97
CDX79216 Canola endoplasmic reticulum, extracellular, vacuole 12.54 20.42
CDY41850 Canola plasma membrane 17.36 19.35
CDY06643 Canola golgi, peroxisome, plasma membrane 22.83 18.83
CDY10201 Canola golgi, peroxisome, plasma membrane 23.47 17.59
CDY15580 Canola plasma membrane 22.83 17.11
CDX86520 Canola golgi, peroxisome, plasma membrane 22.83 17.11
CDX79220 Canola mitochondrion 19.29 12.37
CDY41331 Canola cytosol, peroxisome, plasma membrane 0.64 0.81
Protein Annotations
EnsemblPlants:CDX70255EnsemblPlantsGene:GSBRNA2T00136393001GO:A0A078BZU4InterPro:Sugar_P_trans_domPANTHER:PTHR44010PANTHER:PTHR44010:SF2
PFAM:PF03151ProteinID:CDX70255ProteinID:CDX70255.1SEG:segSUPFAM:SSF103481TMHMM:TMhelix
UniParc:UPI000189D4B0MapMan:35.1::::
Description
BnaA10g26040D
Coordinates
chrLK031790:+:3795304..3797264
Molecular Weight (calculated)
33843.4 Da
IEP (calculated)
10.211
GRAVY (calculated)
0.816
Length
311 amino acids
Sequence
(BLAST)
001: MSSSSSSKKQ TLFISTLIIS WYSSNIGVLL LNKFLLSNYG FKFPIFLTMC HMSACAFLSY ISIVFLKLVP LQHLKSRSQF LKVATLSVVF CASVVGGNIS
101: LRYLPVSFNQ AVGATTPFFT ALFAYLMTLK REAWVTYGAL VPVVAGVVIA SGGEPGFHWF GFIMCISATA ARAFKSVLQG ILLSSEGEKL NSMNLMLYMS
201: PIAVVALLPV TLVMEPDVIS LTLTLAKQHQ YMWILLLVNS VMAYSANLLN FLVTKHTSAL TLQVLGNAKG AVAVVISILI FQNPVTVMGI GGYSITVLGV
301: VAYGETKRRF R
Best Arabidopsis Sequence Match ( AT5G04160.1 )
(BLAST)
001: MSSSAKKQTL FISTLIISWY SSNIGVLLLN KFLLSNYGFK FPIFLTMCHM SACAILSYIS IVFLKLVPLQ HLKSRSQFLK VATLSIVFCA SVVGGNISLR
101: YLPVSFNQAV GATTPFFTAL FAYLMTFKRE AWVTYGALVP VVAGVVIASG GEPGFHWFGF IMCISATAAR AFKSVLQGIL LSSEGEKLNS MNLMLYMSPI
201: AVIALLPVTL FMEPDVISVT LTLAKQHQYM WILLLVNSVM AYSANLLNFL VTKHTSALTL QVLGNAKGAV AVVISILIFQ NPVTVMGIGG YSITVLGVVA
301: YGETKRRFR
Arabidopsis Description
UUAT1UDP-URONIC ACID TRANSPORTER 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYE5]
SUBAcon: [endoplasmic reticulum,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.