Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005339.1-P | Field mustard | nucleus | 91.57 | 93.83 |
| CDY31690 | Canola | cytosol, nucleus, plastid | 90.36 | 92.59 |
| CDY32126 | Canola | nucleus | 71.08 | 77.12 |
| AT2G35470.1 | Thale cress | nucleus | 70.48 | 70.06 |
| KRH74376 | Soybean | extracellular, nucleus, peroxisome | 36.14 | 46.88 |
| VIT_02s0012g01870.t01 | Wine grape | cytosol | 39.16 | 44.22 |
| Solyc08g076520.2.1 | Tomato | cytosol | 37.95 | 37.72 |
| PGSC0003DMT400038355 | Potato | cytosol | 37.35 | 37.35 |
| KRH39572 | Soybean | nucleus, plasma membrane, vacuole | 33.13 | 29.73 |
Protein Annotations
| EnsemblPlants:CDX84204 | EnsemblPlantsGene:GSBRNA2T00141255001 | GO:A0A078D759 | PANTHER:PTHR35297 | PANTHER:PTHR35297:SF2 | ProteinID:CDX84204 |
| ProteinID:CDX84204.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EE993C | MapMan:35.2 | : |
Description
BnaC04g09660D
Coordinates
chrLK031836:+:737877..738873
Molecular Weight (calculated)
18709.9 Da
IEP (calculated)
7.348
GRAVY (calculated)
-0.705
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MQRLSIDSSA SKLHSYGGRK DDIHDHDDLK HKESLSSPPL SSSSSTANYD DDELKDFKPR RLSLQSPTHQ NGEKLVHFIP VLTLICFIIL YLSSHAPSQS
101: DLAQFNGFMR RSKHLDSDED GEISKLMISS DALAIRSSIR NLKETESSAS ESLPRRRTSH RKIADF
101: DLAQFNGFMR RSKHLDSDED GEISKLMISS DALAIRSSIR NLKETESSAS ESLPRRRTSH RKIADF
001: MQRISLDSSA SKLHSYGGRK DDTYDIDDLK PASSSPSSSS SAVDYDDHEL KDFKPRRLSS LQSPFVTTNQ KQEKLVHFIP ILTLICFIIL YLTSYAPSQS
101: DLAQFNGFMR PSKHLESSDE NGDEISGFIR ADTLSIRSSV RNLQETESFT TKSLPRRRTS HRKTADF
101: DLAQFNGFMR PSKHLESSDE NGDEISGFIR ADTLSIRSSV RNLQETESFT TKSLPRRRTS HRKTADF
Arabidopsis Description
At2g35470 [Source:UniProtKB/TrEMBL;Acc:O82293]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.