Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH74376 | Soybean | extracellular, nucleus, peroxisome | 40.14 | 46.09 |
| PGSC0003DMT400038355 | Potato | cytosol | 45.58 | 40.36 |
| CDY31690 | Canola | cytosol, nucleus, plastid | 44.22 | 40.12 |
| Solyc08g076520.2.1 | Tomato | cytosol | 44.9 | 39.52 |
| CDX84204 | Canola | nucleus | 44.22 | 39.16 |
| Bra005339.1-P | Field mustard | nucleus | 42.86 | 38.89 |
| AT2G35470.1 | Thale cress | nucleus | 43.54 | 38.32 |
| Bra017319.1-P | Field mustard | nucleus | 38.78 | 37.25 |
| CDY32126 | Canola | nucleus | 38.1 | 36.6 |
| KRH39572 | Soybean | nucleus, plasma membrane, vacuole | 37.41 | 29.73 |
Protein Annotations
| EntrezGene:100267682 | wikigene:100267682 | MapMan:35.2 | EMBL:AM477014 | ProteinID:CAN83757 | ProteinID:CAN83757.1 |
| ProteinID:CCB57870 | ProteinID:CCB57870.1 | UniProt:F6HT60 | EMBL:FN596247 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | EntrezGene:LOC100267682 | wikigene:LOC100267682 | PANTHER:PTHR35297 | PANTHER:PTHR35297:SF2 | TIGR:TC58341 |
| TIGR:TC59297 | TMHMM:TMhelix | UniParc:UPI0001982BBF | ArrayExpress:VIT_02s0012g01870 | EnsemblPlantsGene:VIT_02s0012g01870 | EnsemblPlants:VIT_02s0012g01870.t01 |
| unigene:Vvi.19458 | RefSeq:XP_002278506 | RefSeq:XP_002278506.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr2:-:8336151..8337069
Molecular Weight (calculated)
16505.7 Da
IEP (calculated)
9.111
GRAVY (calculated)
-0.548
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MQRQSLGSPS SKLHIHGGGG GGAKEEILKA EKDLNQSQND DEADHKSLKP LRSSSSPPDK LIHLIPLLML FCFLLLYLFS HDPSHSELAQ FDGFKKRSSK
101: LTDSNEIADL ERFVVKSDVF SIRSLRNLQE IGTYAPKSRL HRKMGDF
101: LTDSNEIADL ERFVVKSDVF SIRSLRNLQE IGTYAPKSRL HRKMGDF
001: MQRISLDSSA SKLHSYGGRK DDTYDIDDLK PASSSPSSSS SAVDYDDHEL KDFKPRRLSS LQSPFVTTNQ KQEKLVHFIP ILTLICFIIL YLTSYAPSQS
101: DLAQFNGFMR PSKHLESSDE NGDEISGFIR ADTLSIRSSV RNLQETESFT TKSLPRRRTS HRKTADF
101: DLAQFNGFMR PSKHLESSDE NGDEISGFIR ADTLSIRSSV RNLQETESFT TKSLPRRRTS HRKTADF
Arabidopsis Description
At2g35470 [Source:UniProtKB/TrEMBL;Acc:O82293]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.