Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005339.1-P | Field mustard | nucleus | 73.05 | 75.31 |
| CDY31690 | Canola | cytosol, nucleus, plastid | 73.05 | 75.31 |
| CDX84204 | Canola | nucleus | 70.06 | 70.48 |
| Bra017319.1-P | Field mustard | nucleus | 62.28 | 67.97 |
| CDY32126 | Canola | nucleus | 61.68 | 67.32 |
| KRH74376 | Soybean | extracellular, nucleus, peroxisome | 34.13 | 44.53 |
| VIT_02s0012g01870.t01 | Wine grape | cytosol | 38.32 | 43.54 |
| Solyc08g076520.2.1 | Tomato | cytosol | 38.32 | 38.32 |
| PGSC0003DMT400038355 | Potato | cytosol | 37.72 | 37.95 |
| KRH39572 | Soybean | nucleus, plasma membrane, vacuole | 29.94 | 27.03 |
Protein Annotations
| MapMan:35.2 | EntrezGene:818112 | UniProt:A0A178VR18 | ProteinID:AAC36174.1 | ProteinID:AEC09111.1 | EMBL:AK176030 |
| ArrayExpress:AT2G35470 | EnsemblPlantsGene:AT2G35470 | RefSeq:AT2G35470 | TAIR:AT2G35470 | RefSeq:AT2G35470-TAIR-G | EnsemblPlants:AT2G35470.1 |
| TAIR:AT2G35470.1 | EMBL:BT025764 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
| RefSeq:NP_565804.1 | UniProt:O82293 | ProteinID:OAP07503.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR35297 | PANTHER:PTHR35297:SF2 | TMHMM:TMhelix |
| UniParc:UPI000009E98A | SEG:seg | : | : | : | : |
Description
At2g35470 [Source:UniProtKB/TrEMBL;Acc:O82293]
Coordinates
chr2:-:14908487..14909863
Molecular Weight (calculated)
18886.0 Da
IEP (calculated)
7.720
GRAVY (calculated)
-0.659
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MQRISLDSSA SKLHSYGGRK DDTYDIDDLK PASSSPSSSS SAVDYDDHEL KDFKPRRLSS LQSPFVTTNQ KQEKLVHFIP ILTLICFIIL YLTSYAPSQS
101: DLAQFNGFMR PSKHLESSDE NGDEISGFIR ADTLSIRSSV RNLQETESFT TKSLPRRRTS HRKTADF
101: DLAQFNGFMR PSKHLESSDE NGDEISGFIR ADTLSIRSSV RNLQETESFT TKSLPRRRTS HRKTADF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.