Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- endoplasmic reticulum 4
- golgi 4
- extracellular 3
- vacuole 3
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g071920.2.1 | |
| Solyc03g005980.2.1 | |
| Solyc08g076520.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G04160.1 | Solyc08g076520.2.1 | AT2G35470.1 | 21798944 |
| AT5G04160.1 | Solyc02g071920.2.1 | AT4G19030.1 | 21798944 |
| AT5G04160.1 | Solyc03g005980.2.1 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400033107 | Potato | endoplasmic reticulum, plasma membrane | 82.58 | 97.34 |
| Solyc10g079280.1.1 | Tomato | endoplasmic reticulum, plasma membrane | 90.32 | 90.32 |
| Solyc10g079910.1.1 | Tomato | endoplasmic reticulum, plasma membrane | 89.03 | 89.03 |
| VIT_08s0007g08970.t01 | Wine grape | plastid | 81.29 | 79.5 |
| AT5G04160.1 | Thale cress | endoplasmic reticulum, plasma membrane | 78.71 | 78.96 |
| CDX70255 | Canola | endoplasmic reticulum, plasma membrane | 78.39 | 78.14 |
| CDY41396 | Canola | endoplasmic reticulum, plasma membrane | 78.39 | 78.14 |
| Bra009481.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 77.74 | 77.49 |
| CDY30718 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 79.03 | 75.62 |
| CDY56711 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 79.03 | 75.62 |
| CDY63119 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 79.03 | 75.62 |
| CDY43207 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 79.03 | 75.62 |
| CDY64269 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 79.03 | 75.62 |
| CDY40726 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 79.03 | 75.62 |
| CDY38198 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 79.03 | 75.62 |
| CDY32060 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 79.03 | 75.62 |
| CDY19068 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 79.03 | 75.62 |
| CDY16783 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 79.03 | 75.62 |
| CDY06070 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 79.03 | 75.62 |
| CDX88102 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 79.03 | 75.62 |
| CDX76352 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 79.03 | 75.62 |
| CDY71741 | Canola | endoplasmic reticulum, plasma membrane | 69.03 | 74.56 |
| CDY00918 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 28.39 | 73.95 |
| Bra005796.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 66.77 | 73.93 |
| CDX80906 | Canola | endoplasmic reticulum, plasma membrane | 64.52 | 71.68 |
| Solyc05g052790.2.1 | Tomato | endoplasmic reticulum, plasma membrane | 70.32 | 70.55 |
| KRH66884 | Soybean | peroxisome | 79.03 | 70.4 |
| AT3G10290.1 | Thale cress | plastid | 79.68 | 69.58 |
| KRG95205 | Soybean | peroxisome | 78.39 | 69.43 |
| CDY53550 | Canola | mitochondrion, plastid | 79.03 | 61.56 |
| CDY42695 | Canola | endoplasmic reticulum, plasma membrane | 79.03 | 61.25 |
| Solyc08g079790.1.1 | Tomato | golgi, mitochondrion, peroxisome, plastid | 59.68 | 51.97 |
| Bra034102.1-P | Field mustard | cytosol, endoplasmic reticulum, plasma membrane | 77.74 | 42.35 |
| Solyc06g060370.2.1 | Tomato | plasma membrane | 31.29 | 28.53 |
| Solyc11g012880.1.1 | Tomato | plasma membrane | 30.97 | 28.49 |
| Solyc12g006500.1.1 | Tomato | plasma membrane | 28.71 | 25.43 |
| Solyc06g066070.1.1 | Tomato | plasma membrane | 27.42 | 25.0 |
| Solyc10g007610.2.1 | Tomato | plasma membrane | 26.77 | 24.63 |
| Solyc08g060940.1.1 | Tomato | plasma membrane | 27.42 | 24.22 |
| Solyc07g056530.2.1 | Tomato | plasma membrane, vacuole | 25.48 | 23.44 |
| Solyc02g066910.2.1 | Tomato | plasma membrane | 27.74 | 22.81 |
| Solyc02g088900.2.1 | Tomato | plasma membrane | 27.1 | 22.05 |
| Solyc07g055700.2.1 | Tomato | nucleus | 24.19 | 15.43 |
| Solyc12g010990.1.1 | Tomato | cytosol | 21.94 | 12.81 |
Protein Annotations
| EnsemblPlants:Solyc04g016280.2.1 | EnsemblPlantsGene:Solyc04g016280.2 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:Sugar_P_trans_dom |
| PANTHER:PTHR44010 | PANTHER:PTHR44010:SF2 | PFAM:PF03151 | SEG:seg | SUPFAM:SSF103481 | TMHMM:TMhelix |
| UniParc:UPI000276715D | UniProt:K4BQC8 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr4:-:7068003..7071369
Molecular Weight (calculated)
33592.2 Da
IEP (calculated)
10.033
GRAVY (calculated)
0.810
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTPQSEKQA LFITSLIIFW YSSNIGVLLL NKLLLSNYGF SFPIFLTMCH MSACAVLSYV SIVFLKIVPF QRIKSRSQFL RISTLSLVFC GSVVGGNISL
101: RYLPVSFNQA VGATTPFFTA LFAYIITMKR EAWLTYGCLV PVVAGVVIAS GGEPNFHLYG FIMCIGATAA RAFKSVLQGV LLSSEGEKLN SMNLLLYMSP
201: IAVLVLMPAA IIMEPNVMAV TATLATEHRY LGLLILVNSA MAYGANLLNF LVTKHTSALT LQVLGNAKGA VAVVISILLF RNPVTFTGIA GYTLTVMGVV
301: AYGEAKRRHK
101: RYLPVSFNQA VGATTPFFTA LFAYIITMKR EAWLTYGCLV PVVAGVVIAS GGEPNFHLYG FIMCIGATAA RAFKSVLQGV LLSSEGEKLN SMNLLLYMSP
201: IAVLVLMPAA IIMEPNVMAV TATLATEHRY LGLLILVNSA MAYGANLLNF LVTKHTSALT LQVLGNAKGA VAVVISILLF RNPVTFTGIA GYTLTVMGVV
301: AYGEAKRRHK
001: MSSHARGKEL IPLLSFSHQK KQPNLSISST TKMNKKNPDQ KSDMSSSSSS PKKQTLFISS LIILWYTSNI GVLLLNKFLL SNYGFKFPIF LTMCHMSACA
101: ILSYVSIVFL KLVPLQYLKS RSQFLKVATL SIVFCASVVG GNISLRYLPV SFNQAVGATT PFFTALFAYI MTFKREAWVT YGALVPVVTG VVIASGGEPG
201: FHWFGFIMCI SATAARAFKS VLQGILLSSE GERLNSMNLM LYMSPIAVIA LLPVTIFMEP DVMSVTLTLG RQHKYMYILL LVNSVMAYSA NLLNFLVTKH
301: TSALTLQVLG NAKGAVAVVI SILLFRNPVT VMGIGGYSIT VLGVVAYGET KRRFR
101: ILSYVSIVFL KLVPLQYLKS RSQFLKVATL SIVFCASVVG GNISLRYLPV SFNQAVGATT PFFTALFAYI MTFKREAWVT YGALVPVVTG VVIASGGEPG
201: FHWFGFIMCI SATAARAFKS VLQGILLSSE GERLNSMNLM LYMSPIAVIA LLPVTIFMEP DVMSVTLTLG RQHKYMYILL LVNSVMAYSA NLLNFLVTKH
301: TSALTLQVLG NAKGAVAVVI SILLFRNPVT VMGIGGYSIT VLGVVAYGET KRRFR
Arabidopsis Description
Probable sugar phosphate/phosphate translocator At3g10290 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS40]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.