CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79216	Canola	endoplasmic reticulum, extracellular, vacuole	2.85	3.66
CDY00918	Canola	endoplasmic reticulum, extracellular, plasma membrane	0.81	1.68
CDX79220	Canola	mitochondrion	2.85	1.44
CDY38193	Canola	peroxisome, plasma membrane, plastid	0.81	1.17
CDY70208	Canola	peroxisome, plasma membrane, plastid	0.81	1.17
CDY25067	Canola	peroxisome, plasma membrane, plastid	0.81	1.17
CDY63382	Canola	peroxisome, plasma membrane, plastid	0.81	1.17
CDY05491	Canola	endoplasmic reticulum, plasma membrane, vacuole	1.63	1.16
CDX88177	Canola	endoplasmic reticulum, plasma membrane, vacuole	1.22	0.87
CDX80508	Canola	endoplasmic reticulum, plasma membrane, vacuole	1.22	0.87
CDX78413	Canola	endoplasmic reticulum, plasma membrane, vacuole	1.22	0.86
CDY36312	Canola	endoplasmic reticulum, extracellular	0.41	0.85
CDY71741	Canola	endoplasmic reticulum, plasma membrane	0.81	0.7
CDY36328	Canola	endoplasmic reticulum, plasma membrane, vacuole	0.41	0.68
CDX70255	Canola	endoplasmic reticulum, plasma membrane	0.81	0.64
CDY41396	Canola	endoplasmic reticulum, plasma membrane	0.81	0.64
CDY32060	Canola	endoplasmic reticulum, mitochondrion, plasma membrane	0.81	0.62
CDY06070	Canola	endoplasmic reticulum, mitochondrion, plasma membrane	0.81	0.62
CDY30718	Canola	endoplasmic reticulum, mitochondrion, plasma membrane	0.81	0.62
CDY19068	Canola	endoplasmic reticulum, mitochondrion, plasma membrane	0.81	0.62
CDY38198	Canola	endoplasmic reticulum, mitochondrion, plasma membrane	0.81	0.62
CDY40726	Canola	endoplasmic reticulum, mitochondrion, plasma membrane	0.81	0.62
CDY41333	Canola	endoplasmic reticulum, mitochondrion, plasma membrane	0.81	0.62
CDY16783	Canola	endoplasmic reticulum, mitochondrion, plasma membrane	0.81	0.62
CDX88102	Canola	endoplasmic reticulum, mitochondrion, plasma membrane	0.81	0.62
CDY64269	Canola	endoplasmic reticulum, mitochondrion, plasma membrane	0.81	0.62
CDX76352	Canola	endoplasmic reticulum, mitochondrion, plasma membrane	0.81	0.62
CDY63119	Canola	endoplasmic reticulum, mitochondrion, plasma membrane	0.81	0.62
CDY56711	Canola	endoplasmic reticulum, mitochondrion, plasma membrane	0.81	0.62
CDY43207	Canola	endoplasmic reticulum, mitochondrion, plasma membrane	0.81	0.62
CDX79213	Canola	plasma membrane	0.81	0.6
CDX68051	Canola	plasma membrane	0.81	0.6
CDX87511	Canola	plasma membrane	0.81	0.59
CDX88379	Canola	plasma membrane	0.81	0.59
CDY38825	Canola	plasma membrane	0.81	0.58
CDX96572	Canola	plasma membrane	0.81	0.58
CDY61664	Canola	endoplasmic reticulum, plasma membrane, vacuole	0.81	0.57
CDX70384	Canola	endoplasmic reticulum, plasma membrane, vacuole	0.81	0.57
CDX69775	Canola	endoplasmic reticulum, plasma membrane, vacuole	0.81	0.57
CDY53550	Canola	mitochondrion, plastid	0.81	0.5
CDY42695	Canola	endoplasmic reticulum, plasma membrane	0.81	0.5
CDY10201	Canola	golgi, peroxisome, plasma membrane	0.81	0.48
CDY15580	Canola	plasma membrane	0.81	0.48
CDX86520	Canola	golgi, peroxisome, plasma membrane	0.81	0.48
CDY41850	Canola	plasma membrane	0.41	0.36
CDX80906	Canola	endoplasmic reticulum, plasma membrane	0.41	0.36
CDY11341	Canola	plasma membrane	0.41	0.33
CDX70125	Canola	endoplasmic reticulum, plasma membrane	0.41	0.33
CDX73882	Canola	endoplasmic reticulum, plasma membrane	0.41	0.33
CDX80975	Canola	endoplasmic reticulum, plasma membrane	0.41	0.33
CDX98868	Canola	endoplasmic reticulum, plasma membrane	0.41	0.33
CDY00731	Canola	endoplasmic reticulum, plasma membrane	0.41	0.33
CDY01011	Canola	plasma membrane	0.41	0.32
CDX92132	Canola	plasma membrane	0.41	0.32
CDY08536	Canola	endoplasmic reticulum, plasma membrane	0.41	0.32
CDX98450	Canola	plasma membrane	0.41	0.3
CDY35355	Canola	endoplasmic reticulum, plasma membrane, vacuole	0.41	0.29
CDX76991	Canola	endoplasmic reticulum, plasma membrane, vacuole	0.41	0.29
CDX97572	Canola	plasma membrane	0.41	0.29
CDX76757	Canola	endoplasmic reticulum, plasma membrane, vacuole	0.41	0.29
CDY11527	Canola	endoplasmic reticulum, plasma membrane, vacuole	0.41	0.29
CDX68840	Canola	endoplasmic reticulum, plasma membrane, vacuole	0.41	0.28
CDX75240	Canola	endoplasmic reticulum, plasma membrane, vacuole	0.41	0.28
CDY39113	Canola	plasma membrane	0.41	0.28
CDY33222	Canola	golgi, peroxisome, plasma membrane	0.41	0.28
CDY58615	Canola	cytosol, endoplasmic reticulum, peroxisome, plastid	0.41	0.28
CDY21054	Canola	plastid	0.41	0.28
CDY30085	Canola	endoplasmic reticulum, mitochondrion, peroxisome, plasma membrane, plastid	0.41	0.28
CDX98058	Canola	plastid	0.41	0.28
CDY43289	Canola	plasma membrane	0.41	0.27
CDX77330	Canola	plasma membrane	0.41	0.27
CDX93651	Canola	plasma membrane	0.41	0.27
CDY41853	Canola	plasma membrane	0.41	0.27
CDY63022	Canola	plasma membrane	0.41	0.27
CDY48700	Canola	plasma membrane	0.41	0.27
CDY00919	Canola	extracellular	0.0	0.0
CDY06643	Canola	golgi, peroxisome, plasma membrane	0.0	0.0
CDY66383	Canola	plasma membrane	0.0	0.0

Protein Annotations

EnsemblPlants:CDY41331	EnsemblPlantsGene:GSBRNA2T00072885001	GO:A0A078HUF2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR003388
InterPro:Reticulon	PANTHER:PTHR10994	PANTHER:PTHR10994:SF62	PFAM:PF02453	PFscan:PS50845	ProteinID:CDY41331
ProteinID:CDY41331.1	TMHMM:TMhelix	UniParc:UPI0001B63FBB	UniProt:A0A078HUF2	MapMan:13.7.2.1	:

Description

BnaA01g31880DReticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078HUF2]

Coordinates

chrLK032495:-:147302..148896

Molecular Weight (calculated)

27914.1 Da

IEP (calculated)

8.615

GRAVY (calculated)

0.165

Length

246 amino acids

Sequence
(BLAST)

001: MHEKNIVEDV INDFVDNFTE TVQKKKNVSF FEQEETVSSR FNRMFGREKP IHHVLGGGKS ADVLLWRNKK ISASVLMGAT AIWVLFEWIN FHFLSLVCYG
101: LLLGMIVQFV WSNASGALNR SQSGVPRLVL PKYFFADVGV TVGTEVNRGL MFLQDLACRG SLKQFLMVAI GLWLAAMIGS CCNFLTVLYI GFVGAHTMPV
201: LYERYEDEVD GFVDSLLMKF HSHYKKMDTG FLSRIPSGRF GFKKHD

Best Arabidopsis Sequence Match ( AT3G10260.1 )
(BLAST)

001: MPDKNIVEDV IGDLVDNFTE TVQKNKHGSS FFEQEDSVSS RFNRLFDRQK PIHHVLGGGK SADVLLWRNK KISASVLMGA TAIWVLFEWI NFHFLSLVCY
101: ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG SCCNFLTVLY IGFVGAHTMP
201: VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE

Arabidopsis Description

Reticulon family protein [Source:TAIR;Acc:AT3G10260]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.