CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, golgi, plastid

Predictor Summary:

nucleus 1
golgi 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, plastid
Any Predictor:	cytosol, golgi, nucleus
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX78905
CDX98596
CDX99411
CDY01565

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43970.1	CDX78905	AT4G19030.1	21798944
AT5G43970.1	CDX98596	AT4G19030.1	21798944
AT5G43970.1	CDX99411	AT4G19030.1	21798944
AT5G43970.1	CDY01565	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033708.1-P	Field mustard	cytosol, golgi, nucleus	98.97	98.97
CDX94732	Canola	golgi, mitochondrion, plastid	96.91	96.91
CDY36964	Canola	mitochondrion	86.6	84.0
CDX96932	Canola	extracellular, golgi, mitochondrion	82.47	80.81
AT5G43970.1	Thale cress	cytosol	81.44	79.8
CDY13134	Canola	cytosol, golgi, plastid	76.29	74.0
KRH19624	Soybean	mitochondrion	62.89	62.89
KRH32248	Soybean	plastid	61.86	61.86
CDY18202	Canola	mitochondrion	60.82	61.46
VIT_07s0005g04240.t01	Wine grape	mitochondrion	61.86	60.0
CDX89847	Canola	cytosol	58.76	59.38
VIT_05s0049g01870.t01	Wine grape	plastid	57.73	57.73
Os02t0131600-00	Rice	cytosol	50.52	57.65
EES14032	Sorghum	cytosol, golgi, mitochondrion, plastid	53.61	55.91
Os02t0496900-01	Rice	mitochondrion	53.61	55.91
TraesCS2B01G399400.1	Wheat	mitochondrion	51.55	55.56
KRH30340	Soybean	plastid	54.64	54.64
TraesCS7B01G179400.1	Wheat	plastid	50.52	54.44
TraesCS7A01G282000.1	Wheat	plastid	50.52	54.44
TraesCS2B01G399500.1	Wheat	mitochondrion, plastid	50.52	54.44
TraesCS2A01G382100.1	Wheat	plastid	50.52	54.44
Zm00001d031852_P001	Maize	plastid	52.58	54.26
KRH30220	Soybean	plastid	53.61	53.61
TraesCS7D01G280500.1	Wheat	plastid	49.48	53.33
Solyc06g008120.1.1	Tomato	nucleus	58.76	53.27
KRH71585	Soybean	mitochondrion	46.39	52.33
Solyc03g005700.1.1	Tomato	cytosol, plastid	50.52	49.0
HORVU7Hr1G064180.5	Barley	cytosol, plastid	51.55	47.17
PGSC0003DMT400035001	Potato	plastid	49.48	47.06
TraesCS2D01G378600.1	Wheat	plastid	50.52	44.95
OQU83182	Sorghum	endoplasmic reticulum	30.93	36.14

Protein Annotations

MapMan:23.2.1.4	GO:A0A078GAA2	UniProt:A0A078GAA2	EnsemblPlants:CDY22321	ProteinID:CDY22321	ProteinID:CDY22321.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00018794001
PIRSF:PIRSF038151	PANTHER:PTHR12504	PANTHER:PTHR12504:SF0	TMHMM:TMhelix	InterPro:Tom22	InterPro:Tom22_pln
UniParc:UPI0004EEACDE	SEG:seg	:	:	:	:

Description

BnaA06g36430DBnaA06g36430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GAA2]

Coordinates

chrLK032130:-:115818..116111

Molecular Weight (calculated)

10130.3 Da

IEP (calculated)

10.487

GRAVY (calculated)

0.100

Length

97 amino acids

Sequence
(BLAST)

1: MAAKRFGGSG KSGGGDSNIM AKISNSEIVS QGRRVAGDAV GVSKKLLWST GKAAWIAGTT FLILVVPLII EMDREAQLNE IDLQQASLLG APAQRGF

Best Arabidopsis Sequence Match ( AT5G43970.1 )
(BLAST)

1: MAAKRIGAGK SGGGDPNILA RISNSEIVSQ GRRAAGDAVE VSKKLLRSTG KAAWIAGTTF LILVVPLIIE MDREAQINEI ELQQASLLGA PPSPMQRGL

Arabidopsis Description

TOM9-2TOM9-2 [Source:UniProtKB/TrEMBL;Acc:A0A178UKM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.