CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
endoplasmic reticulum 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11076
KRH21197
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43970.1	KRH11076	AT4G19030.1	21798944
AT5G43970.1	KRH21197	AT4G19030.1	21798944
AT5G43970.1	KRH42923	AT4G19030.1	21798944
AT5G43970.1	KRH42926	AT4G19030.1	21798944
AT5G43970.1	KRH45251	AT4G19030.1	21798944
AT5G43970.1	KRH59035	AT4G19030.1	21798944
AT5G43970.1	KRH59036	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19624	Soybean	mitochondrion	96.91	96.91
KRH30220	Soybean	plastid	84.54	84.54
KRH30340	Soybean	plastid	83.51	83.51
KRH71585	Soybean	mitochondrion	72.16	81.4
Os02t0496900-01	Rice	mitochondrion	64.95	67.74
Os02t0131600-00	Rice	cytosol	58.76	67.06
EES14032	Sorghum	cytosol, golgi, mitochondrion, plastid	61.86	64.52
TraesCS7B01G179400.1	Wheat	plastid	59.79	64.44
TraesCS7A01G282000.1	Wheat	plastid	59.79	64.44
TraesCS2B01G399400.1	Wheat	mitochondrion	59.79	64.44
TraesCS2A01G382100.1	Wheat	plastid	59.79	64.44
VIT_05s0049g01870.t01	Wine grape	plastid	63.92	63.92
CDX94732	Canola	golgi, mitochondrion, plastid	63.92	63.92
TraesCS7D01G280500.1	Wheat	plastid	58.76	63.33
Zm00001d031852_P001	Maize	plastid	60.82	62.77
CDY22321	Canola	cytosol, golgi, plastid	61.86	61.86
Bra033708.1-P	Field mustard	cytosol, golgi, nucleus	61.86	61.86
TraesCS2B01G399500.1	Wheat	mitochondrion, plastid	56.7	61.11
Bra027518.1-P	Field mustard	cytosol, golgi, nucleus	61.86	60.61
Solyc06g008120.1.1	Tomato	nucleus	65.98	59.81
AT5G43970.1	Thale cress	cytosol	60.82	59.6
CDX96932	Canola	extracellular, golgi, mitochondrion	60.82	59.6
CDY36964	Canola	mitochondrion	60.82	59.0
CDY13134	Canola	cytosol, golgi, plastid	59.79	58.0
Solyc03g005700.1.1	Tomato	cytosol, plastid	56.7	55.0
HORVU7Hr1G064180.5	Barley	cytosol, plastid	59.79	54.72
PGSC0003DMT400035001	Potato	plastid	56.7	53.92
TraesCS2D01G378600.1	Wheat	plastid	59.79	53.21
AT1G04070.1	Thale cress	golgi, mitochondrion, plastid	51.55	53.19
CDY18202	Canola	mitochondrion	52.58	53.12
CDX89847	Canola	cytosol	51.55	52.08
Bra015286.1-P	Field mustard	cytosol, golgi, nucleus	51.55	52.08
OQU83182	Sorghum	endoplasmic reticulum	34.02	39.76

Protein Annotations

EntrezGene:100817833	MapMan:23.2.1.4	EMBL:ACUP02006105	EnsemblPlantsGene:GLYMA_10G040200	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741
GO:GO:0005742	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0015266
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0030150	GO:GO:0031307	GO:GO:0045040
UniProt:I1L8H3	EnsemblPlants:KRH32248	ProteinID:KRH32248	ProteinID:KRH32248.1	PFAM:PF04281	PIRSF:PIRSF038151
PANTHER:PTHR12504	PANTHER:PTHR12504:SF0	TMHMM:TMhelix	InterPro:Tom22	InterPro:Tom22_pln	UniParc:UPI000233D25D

Description

hypothetical protein

Coordinates

chr10:-:3547051..3547805

Molecular Weight (calculated)

10286.6 Da

IEP (calculated)

11.030

GRAVY (calculated)

0.019

Length

97 amino acids

Sequence
(BLAST)

1: MASRRGGVSL PERPSNNSGS VLAKISRSSI VTRGKEAAVD AAFVAKKLLR STGKAAWIAG TTFLVLVVPL IVEMDREQQL NDLELQQASL LGTPAPK

Best Arabidopsis Sequence Match ( AT5G43970.1 )
(BLAST)

1: MAAKRIGAGK SGGGDPNILA RISNSEIVSQ GRRAAGDAVE VSKKLLRSTG KAAWIAGTTF LILVVPLIIE MDREAQINEI ELQQASLLGA PPSPMQRGL

Arabidopsis Description

TOM9-2TOM9-2 [Source:UniProtKB/TrEMBL;Acc:A0A178UKM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.