CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, extracellular

Predictor Summary:

nucleus 1
golgi 1
mitochondrion 2
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, mitochondrion
Any Predictor:	golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX78905
CDX98596
CDX99411
CDY01565

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43970.1	CDX78905	AT4G19030.1	21798944
AT5G43970.1	CDX98596	AT4G19030.1	21798944
AT5G43970.1	CDX99411	AT4G19030.1	21798944
AT5G43970.1	CDY01565	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36964	Canola	mitochondrion	87.88	87.0
CDX94732	Canola	golgi, mitochondrion, plastid	81.82	83.51
AT5G43970.1	Thale cress	cytosol	82.83	82.83
CDY22321	Canola	cytosol, golgi, plastid	80.81	82.47
CDY13134	Canola	cytosol, golgi, plastid	77.78	77.0
KRH19624	Soybean	mitochondrion	60.61	61.86
VIT_07s0005g04240.t01	Wine grape	mitochondrion	61.62	61.0
KRH32248	Soybean	plastid	59.6	60.82
VIT_05s0049g01870.t01	Wine grape	plastid	57.58	58.76
CDY18202	Canola	mitochondrion	56.57	58.33
Os02t0131600-00	Rice	cytosol	49.49	57.65
EES14032	Sorghum	cytosol, golgi, mitochondrion, plastid	53.54	56.99
Os02t0496900-01	Rice	mitochondrion	53.54	56.99
CDX89847	Canola	cytosol	54.55	56.25
Solyc06g008120.1.1	Tomato	nucleus	60.61	56.07
TraesCS2B01G399400.1	Wheat	mitochondrion	50.51	55.56
Zm00001d031852_P001	Maize	plastid	52.53	55.32
TraesCS2A01G382100.1	Wheat	plastid	49.49	54.44
TraesCS2B01G399500.1	Wheat	mitochondrion, plastid	49.49	54.44
TraesCS7A01G282000.1	Wheat	plastid	49.49	54.44
TraesCS7B01G179400.1	Wheat	plastid	49.49	54.44
TraesCS7D01G280500.1	Wheat	plastid	49.49	54.44
KRH30340	Soybean	plastid	52.53	53.61
KRH30220	Soybean	plastid	52.53	53.61
KRH71585	Soybean	mitochondrion	45.45	52.33
Solyc03g005700.1.1	Tomato	cytosol, plastid	52.53	52.0
PGSC0003DMT400035001	Potato	plastid	51.52	50.0
HORVU7Hr1G064180.5	Barley	cytosol, plastid	51.52	48.11
TraesCS2D01G378600.1	Wheat	plastid	49.49	44.95
OQU83182	Sorghum	endoplasmic reticulum	30.3	36.14

Protein Annotations

MapMan:23.2.1.4	GO:A0A078E794	EnsemblPlants:CDX96932	ProteinID:CDX96932	ProteinID:CDX96932.1	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0016020	EnsemblPlantsGene:GSBRNA2T00103840001	PIRSF:PIRSF038151	PANTHER:PTHR12504
PANTHER:PTHR12504:SF0	TMHMM:TMhelix	InterPro:Tom22	InterPro:Tom22_pln	UniParc:UPI0004EB5BF8	SEG:seg

Description

BnaC02g30700D

Coordinates

chrLK031896:+:614182..614481

Molecular Weight (calculated)

10327.7 Da

IEP (calculated)

10.922

GRAVY (calculated)

0.199

Length

99 amino acids

Sequence
(BLAST)

1: MVKRIGGAGK SSGGDSNILV RISNSEIVSQ GRRAAGDAVG VAKKLIWSTG KAAWIAGTTF LILVVPLIIE MDREAQLNEI NLQQASLLGA PASPVQRGM

Best Arabidopsis Sequence Match ( AT5G43970.1 )
(BLAST)

1: MAAKRIGAGK SGGGDPNILA RISNSEIVSQ GRRAAGDAVE VSKKLLRSTG KAAWIAGTTF LILVVPLIIE MDREAQINEI ELQQASLLGA PPSPMQRGL

Arabidopsis Description

TOM9-2TOM9-2 [Source:UniProtKB/TrEMBL;Acc:A0A178UKM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.