Factsheet for PGSC0003DMT400035001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400071510
PGSC0003DMT400073246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43970.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT5G43970.1	PGSC0003DMT400073246	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g005700.1.1	Tomato	cytosol, plastid	94.12	96.0
KRH32248	Soybean	plastid	53.92	56.7
KRH19624	Soybean	mitochondrion	53.92	56.7
VIT_05s0049g01870.t01	Wine grape	plastid	52.94	55.67
TraesCS2A01G382100.1	Wheat	plastid	47.06	53.33
TraesCS2B01G399400.1	Wheat	mitochondrion	47.06	53.33
TraesCS7B01G179400.1	Wheat	plastid	47.06	53.33
TraesCS7A01G282000.1	Wheat	plastid	47.06	53.33
Os02t0131600-00	Rice	cytosol	44.12	52.94
Os02t0496900-01	Rice	mitochondrion	48.04	52.69
AT5G43970.1	Thale cress	cytosol	50.98	52.53
Bra027518.1-P	Field mustard	cytosol, golgi, nucleus	50.98	52.53
TraesCS7D01G280500.1	Wheat	plastid	46.08	52.22
CDX94732	Canola	golgi, mitochondrion, plastid	49.02	51.55
CDX96932	Canola	extracellular, golgi, mitochondrion	50.0	51.52
KRH71585	Soybean	mitochondrion	43.14	51.16
TraesCS2B01G399500.1	Wheat	mitochondrion, plastid	45.1	51.11
CDY36964	Canola	mitochondrion	50.0	51.0
CDY13134	Canola	cytosol, golgi, plastid	50.0	51.0
EES14032	Sorghum	cytosol, golgi, mitochondrion, plastid	46.08	50.54
KRH30220	Soybean	plastid	48.04	50.52
Bra033708.1-P	Field mustard	cytosol, golgi, nucleus	48.04	50.52
Zm00001d031852_P001	Maize	plastid	46.08	50.0
KRH30340	Soybean	plastid	47.06	49.48
CDY22321	Canola	cytosol, golgi, plastid	47.06	49.48
VIT_07s0005g04240.t01	Wine grape	mitochondrion	48.04	49.0
AT1G04070.1	Thale cress	golgi, mitochondrion, plastid	45.1	48.94
HORVU7Hr1G064180.5	Barley	cytosol, plastid	48.04	46.23
Bra015286.1-P	Field mustard	cytosol, golgi, nucleus	43.14	45.83
CDY18202	Canola	mitochondrion	42.16	44.79
TraesCS2D01G378600.1	Wheat	plastid	47.06	44.04
CDX89847	Canola	cytosol	41.18	43.75
OQU83182	Sorghum	endoplasmic reticulum	32.35	39.76

Protein Annotations

EntrezGene:102602631	MapMan:23.2.1.4	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	UniProt:M1B1N1	PFAM:PD033325	PFAM:PF04281	EnsemblPlantsGene:PGSC0003DMG400013457	PGSC:PGSC0003DMG400013457
EnsemblPlants:PGSC0003DMT400035001	PIRSF:PIRSF038151	PANTHER:PTHR12504	PANTHER:PTHR12504:SF0	TMHMM:TMhelix	InterPro:Tom22
InterPro:Tom22_pln	UniParc:UPI0002957454	RefSeq:XP_006356070.1	:	:	:

Description

Mitochondrial import receptor subunit TOM22 homolog 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400013457]

Coordinates

chr3:-:698966..699781

Molecular Weight (calculated)

10552.9 Da

IEP (calculated)

10.626

GRAVY (calculated)

0.071

Length

102 amino acids

Sequence
(BLAST)

001: MAPMGGKRFA LTGSSSSSKN DGVLARISQS SIVTKGKQAA CGATYVGKKL AKSTGKAAWL VATTFLVLGL PLIIVMDREQ QLNDLDLQQA SLLGASPATT
101: QN

Best Arabidopsis Sequence Match ( AT5G43970.1 )
(BLAST)

1: MAAKRIGAGK SGGGDPNILA RISNSEIVSQ GRRAAGDAVE VSKKLLRSTG KAAWIAGTTF LILVVPLIIE MDREAQINEI ELQQASLLGA PPSPMQRGL

Arabidopsis Description

TOM9-2TOM9-2 [Source:UniProtKB/TrEMBL;Acc:A0A178UKM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.