Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 4
- mitochondrion 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| mitochondrion:
28499913
nucleus: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH32248 | Soybean | plastid | 96.91 | 96.91 |
| KRH30220 | Soybean | plastid | 87.63 | 87.63 |
| KRH30340 | Soybean | plastid | 85.57 | 85.57 |
| KRH71585 | Soybean | mitochondrion | 75.26 | 84.88 |
| Os02t0496900-01 | Rice | mitochondrion | 64.95 | 67.74 |
| Os02t0131600-00 | Rice | cytosol | 58.76 | 67.06 |
| CDX94732 | Canola | golgi, mitochondrion, plastid | 64.95 | 64.95 |
| EES14032 | Sorghum | cytosol, golgi, mitochondrion, plastid | 61.86 | 64.52 |
| TraesCS2A01G382100.1 | Wheat | plastid | 59.79 | 64.44 |
| TraesCS2B01G399400.1 | Wheat | mitochondrion | 59.79 | 64.44 |
| TraesCS7A01G282000.1 | Wheat | plastid | 59.79 | 64.44 |
| TraesCS7B01G179400.1 | Wheat | plastid | 59.79 | 64.44 |
| TraesCS7D01G280500.1 | Wheat | plastid | 58.76 | 63.33 |
| CDY22321 | Canola | cytosol, golgi, plastid | 62.89 | 62.89 |
| Bra033708.1-P | Field mustard | cytosol, golgi, nucleus | 62.89 | 62.89 |
| VIT_05s0049g01870.t01 | Wine grape | plastid | 62.89 | 62.89 |
| Zm00001d031852_P001 | Maize | plastid | 60.82 | 62.77 |
| Bra027518.1-P | Field mustard | cytosol, golgi, nucleus | 62.89 | 61.62 |
| TraesCS2B01G399500.1 | Wheat | mitochondrion, plastid | 56.7 | 61.11 |
| CDX96932 | Canola | extracellular, golgi, mitochondrion | 61.86 | 60.61 |
| AT5G43970.1 | Thale cress | cytosol | 61.86 | 60.61 |
| CDY36964 | Canola | mitochondrion | 61.86 | 60.0 |
| Solyc06g008120.1.1 | Tomato | nucleus | 65.98 | 59.81 |
| CDY13134 | Canola | cytosol, golgi, plastid | 60.82 | 59.0 |
| Solyc03g005700.1.1 | Tomato | cytosol, plastid | 56.7 | 55.0 |
| AT1G04070.1 | Thale cress | golgi, mitochondrion, plastid | 52.58 | 54.26 |
| CDY18202 | Canola | mitochondrion | 53.61 | 54.17 |
| PGSC0003DMT400035001 | Potato | plastid | 56.7 | 53.92 |
| HORVU7Hr1G064180.5 | Barley | cytosol, plastid | 58.76 | 53.77 |
| CDX89847 | Canola | cytosol | 52.58 | 53.12 |
| Bra015286.1-P | Field mustard | cytosol, golgi, nucleus | 52.58 | 53.12 |
| TraesCS2D01G378600.1 | Wheat | plastid | 58.76 | 52.29 |
| OQU83182 | Sorghum | endoplasmic reticulum | 34.02 | 39.76 |
Protein Annotations
| EntrezGene:100796059 | MapMan:23.2.1.4 | EMBL:ACUP02008193 | EnsemblPlantsGene:GLYMA_13G126900 | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005741 |
| GO:GO:0005742 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015266 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0030150 | GO:GO:0031307 | GO:GO:0045040 |
| UniProt:I1LYP2 | EnsemblPlants:KRH19624 | ProteinID:KRH19624 | ProteinID:KRH19624.1 | PFAM:PF04281 | PIRSF:PIRSF038151 |
| PANTHER:PTHR12504 | PANTHER:PTHR12504:SF0 | TMHMM:TMhelix | InterPro:Tom22 | InterPro:Tom22_pln | UniParc:UPI000233C07A |
Description
hypothetical protein
Coordinates
chr13:-:24000389..24001338
Molecular Weight (calculated)
10260.5 Da
IEP (calculated)
11.030
GRAVY (calculated)
-0.033
Length
97 amino acids
Sequence
(BLAST)
(BLAST)
1: MASRRGGVSL PDRPSNNSSS VLAKISRSSI VTRGKEAAGD AAFVAKKLLR STGKAAWIAG TTFLVLVVPL IVEMDREQQL NDLELQQASL LGTPAPK
1: MAAKRIGAGK SGGGDPNILA RISNSEIVSQ GRRAAGDAVE VSKKLLRSTG KAAWIAGTTF LILVVPLIIE MDREAQINEI ELQQASLLGA PPSPMQRGL
Arabidopsis Description
TOM9-2TOM9-2 [Source:UniProtKB/TrEMBL;Acc:A0A178UKM7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.