CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, golgi, plastid

Predictor Summary:

nucleus 1
golgi 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, plastid
Any Predictor:	cytosol, golgi, nucleus
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX78905
CDX98596
CDX99411
CDY01565

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43970.1	CDX78905	AT4G19030.1	21798944
AT5G43970.1	CDX98596	AT4G19030.1	21798944
AT5G43970.1	CDX99411	AT4G19030.1	21798944
AT5G43970.1	CDY01565	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36964	Canola	mitochondrion	87.0	87.0
Bra027518.1-P	Field mustard	cytosol, golgi, nucleus	86.0	86.87
AT5G43970.1	Thale cress	cytosol	78.0	78.79
CDX96932	Canola	extracellular, golgi, mitochondrion	77.0	77.78
CDX94732	Canola	golgi, mitochondrion, plastid	74.0	76.29
CDY22321	Canola	cytosol, golgi, plastid	74.0	76.29
VIT_05s0049g01870.t01	Wine grape	plastid	60.0	61.86
KRH19624	Soybean	mitochondrion	59.0	60.82
KRH32248	Soybean	plastid	58.0	59.79
EES14032	Sorghum	cytosol, golgi, mitochondrion, plastid	55.0	59.14
Os02t0496900-01	Rice	mitochondrion	54.0	58.06
VIT_07s0005g04240.t01	Wine grape	mitochondrion	58.0	58.0
Os02t0131600-00	Rice	cytosol	49.0	57.65
CDY18202	Canola	mitochondrion	55.0	57.29
Zm00001d031852_P001	Maize	plastid	53.0	56.38
TraesCS2A01G382100.1	Wheat	plastid	50.0	55.56
TraesCS7A01G282000.1	Wheat	plastid	50.0	55.56
TraesCS7B01G179400.1	Wheat	plastid	50.0	55.56
TraesCS7D01G280500.1	Wheat	plastid	50.0	55.56
TraesCS2B01G399400.1	Wheat	mitochondrion	49.0	54.44
Solyc06g008120.1.1	Tomato	nucleus	58.0	54.21
CDX89847	Canola	cytosol	52.0	54.17
KRH30220	Soybean	plastid	52.0	53.61
KRH71585	Soybean	mitochondrion	46.0	53.49
TraesCS2B01G399500.1	Wheat	mitochondrion, plastid	48.0	53.33
KRH30340	Soybean	plastid	51.0	52.58
Solyc03g005700.1.1	Tomato	cytosol, plastid	52.0	52.0
PGSC0003DMT400035001	Potato	plastid	51.0	50.0
HORVU7Hr1G064180.5	Barley	cytosol, plastid	50.0	47.17
TraesCS2D01G378600.1	Wheat	plastid	49.0	44.95
OQU83182	Sorghum	endoplasmic reticulum	27.0	32.53

Protein Annotations

MapMan:23.2.1.4	GO:A0A078FJH8	UniProt:A0A078FJH8	EnsemblPlants:CDY13134	ProteinID:CDY13134	ProteinID:CDY13134.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00070993001
PIRSF:PIRSF038151	PANTHER:PTHR12504	PANTHER:PTHR12504:SF0	TMHMM:TMhelix	InterPro:Tom22	InterPro:Tom22_pln
UniParc:UPI0004EE64B0	:	:	:	:	:

Description

BnaA09g16830DBnaA09g16830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJH8]

Coordinates

chrLK032031:-:800080..800696

Molecular Weight (calculated)

10662.0 Da

IEP (calculated)

10.193

GRAVY (calculated)

0.001

Length

100 amino acids

Sequence
(BLAST)

1: MMAKRIGGAG KSRDEDSTIL GRISNSDIVS HGRRAAGDAV GVSKKLLWST GKAAWVAGTT FLILVVPLII EMDREAQLNE IDLQQASLLG APAQPMQRGF

Best Arabidopsis Sequence Match ( AT5G43970.1 )
(BLAST)

1: MAAKRIGAGK SGGGDPNILA RISNSEIVSQ GRRAAGDAVE VSKKLLRSTG KAAWIAGTTF LILVVPLIIE MDREAQINEI ELQQASLLGA PPSPMQRGL

Arabidopsis Description

TOM9-2TOM9-2 [Source:UniProtKB/TrEMBL;Acc:A0A178UKM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.