Factsheet for VIT_07s0005g04240.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_10s0003g01830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43970.1	VIT_10s0003g01830.t01	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0049g01870.t01	Wine grape	plastid	62.0	63.92
Solyc06g008120.1.1	Tomato	nucleus	68.0	63.55
Os02t0131600-00	Rice	cytosol	53.0	62.35
CDY22321	Canola	cytosol, golgi, plastid	60.0	61.86
CDX94732	Canola	golgi, mitochondrion, plastid	60.0	61.86
CDX96932	Canola	extracellular, golgi, mitochondrion	61.0	61.62
Bra027518.1-P	Field mustard	cytosol, golgi, nucleus	61.0	61.62
Bra033708.1-P	Field mustard	cytosol, golgi, nucleus	59.0	60.82
AT5G43970.1	Thale cress	cytosol	60.0	60.61
CDY36964	Canola	mitochondrion	60.0	60.0
Os02t0496900-01	Rice	mitochondrion	54.0	58.06
CDY13134	Canola	cytosol, golgi, plastid	58.0	58.0
TraesCS7D01G280500.1	Wheat	plastid	50.0	55.56
TraesCS2B01G399500.1	Wheat	mitochondrion, plastid	50.0	55.56
TraesCS2B01G399400.1	Wheat	mitochondrion	50.0	55.56
EES14032	Sorghum	cytosol, golgi, mitochondrion, plastid	51.0	54.84
TraesCS7B01G179400.1	Wheat	plastid	49.0	54.44
TraesCS7A01G282000.1	Wheat	plastid	49.0	54.44
TraesCS2A01G382100.1	Wheat	plastid	49.0	54.44
Zm00001d031852_P001	Maize	plastid	51.0	54.26
AT1G04070.1	Thale cress	golgi, mitochondrion, plastid	49.0	52.13
CDY18202	Canola	mitochondrion	48.0	50.0
Solyc03g005700.1.1	Tomato	cytosol, plastid	49.0	49.0
CDX89847	Canola	cytosol	47.0	48.96
Bra015286.1-P	Field mustard	cytosol, golgi, nucleus	47.0	48.96
PGSC0003DMT400035001	Potato	plastid	49.0	48.04
HORVU7Hr1G064180.5	Barley	cytosol, plastid	49.0	46.23
TraesCS2D01G378600.1	Wheat	plastid	49.0	44.95
OQU83182	Sorghum	endoplasmic reticulum	29.0	34.94

Protein Annotations

EntrezGene:100261695	wikigene:100261695	MapMan:23.2.1.4	ProteinID:CBI37180	ProteinID:CBI37180.3	UniProt:D7U363
EMBL:FN596502	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0005742	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0009987	GO:GO:0015266	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0030150	GO:GO:0031307	GO:GO:0045040	EntrezGene:LOC100261695	wikigene:LOC100261695	PFAM:PF04281
PIRSF:PIRSF038151	PANTHER:PTHR12504	PANTHER:PTHR12504:SF0	TIGR:TC68978	TMHMM:TMhelix	InterPro:Tom22
InterPro:Tom22_pln	UniParc:UPI0001983B50	ArrayExpress:VIT_07s0005g04240	EnsemblPlantsGene:VIT_07s0005g04240	EnsemblPlants:VIT_07s0005g04240.t01	RefSeq:XP_002272982
RefSeq:XP_002272982.1	:	:	:	:	:

Description

No Description!

Coordinates

chr7:-:7357524..7358083

Molecular Weight (calculated)

10884.2 Da

IEP (calculated)

11.030

GRAVY (calculated)

-0.226

Length

100 amino acids

Sequence
(BLAST)

1: MASQGRRGVS DRRNPKNEGI LSRVSNSISQ SPILFQGRQA ASDAAVVAKK LFKSTGKAAW IAGTTFLILV VPLIIEMDRE QQMNELEMQQ ASLLGTPAQK

Best Arabidopsis Sequence Match ( AT5G43970.1 )
(BLAST)

1: MAAKRIGAGK SGGGDPNILA RISNSEIVSQ GRRAAGDAVE VSKKLLRSTG KAAWIAGTTF LILVVPLIIE MDREAQINEI ELQQASLLGA PPSPMQRGL

Arabidopsis Description

TOM9-2TOM9-2 [Source:UniProtKB/TrEMBL;Acc:A0A178UKM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.